Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq555 141 7e-32
seq370 125 5e-27
seq1374 116 3e-24
seq412 113 3e-23
>seq555
Length=3447
Score = 141 bits (156), Expect = 7e-32
Identities = 102/118 (86%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct 1241 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 1300
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| | ||| || | |||||| |||| || |||||||| ||| ||||||||||||
Sbjct 1301 CTTTCGTACCTGATCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACT 1358
>seq370
Length=5836
Score = 125 bits (138), Expect = 5e-27
Identities = 111/139 (80%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 245 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 186
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | |||| ||| ||| ||| || ||| ||||||||||||
Sbjct 185 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCG 126
Query 121 CACTACGATTTCCGACCGT 139
|||||||||||||||
Sbjct 125 ACGAACGATTTCCGACCGT 107
>seq1374
Length=1034
Score = 116 bits (128), Expect = 3e-24
Identities = 112/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 468 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGA 409
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | |||| ||| ||| ||| || ||| ||||||||||||
Sbjct 408 CTTTCGTCTCTGCTCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACT-C 350
Query 121 CAC-TACGATTTCCGACCGTA 140
||| |||| || || | ||||
Sbjct 349 CACGTACGGTTACCAAGCGTA 329
>seq412
Length=5103
Score = 113 bits (124), Expect = 3e-23
Identities = 95/117 (81%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| | |||
Sbjct 744 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTA 803
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
|||| | ||||| | || | ||| ||| |||||||| ||| |||| ||||||
Sbjct 804 GTTTCCTACCTGCTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCAC 860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351994027000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |