Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq555 141 7e-32 seq370 125 5e-27 seq1374 116 3e-24 seq412 113 3e-23 >seq555 Length=3447 Score = 141 bits (156), Expect = 7e-32 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | |||||||||||||||| |||| Sbjct 1241 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 1300 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | ||| || | |||||| |||| || |||||||| ||| |||||||||||| Sbjct 1301 CTTTCGTACCTGATCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACT 1358 >seq370 Length=5836 Score = 125 bits (138), Expect = 5e-27 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 245 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 186 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 185 CTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCG 126 Query 121 CACTACGATTTCCGACCGT 139 ||||||||||||||| Sbjct 125 ACGAACGATTTCCGACCGT 107 >seq1374 Length=1034 Score = 116 bits (128), Expect = 3e-24 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 468 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGA 409 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||| ||| ||| || ||| |||||||||||| Sbjct 408 CTTTCGTCTCTGCTCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACT-C 350 Query 121 CAC-TACGATTTCCGACCGTA 140 ||| |||| || || | |||| Sbjct 349 CACGTACGGTTACCAAGCGTA 329 >seq412 Length=5103 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| | ||| Sbjct 744 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTA 803 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||| | ||||| | || | ||| ||| |||||||| ||| |||| |||||| Sbjct 804 GTTTCCTACCTGCTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCAC 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351994027000