Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq412 159 3e-37 seq370 141 9e-32 seq555 122 8e-26 seq1374 114 1e-23 >seq412 Length=5103 Score = 159 bits (176), Expect = 3e-37 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||| Sbjct 756 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 815 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || ||||| ||| |||||||||| ||||||||| |||||| | | ||||||| Sbjct 816 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 875 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | | ||| ||||||| |||||||||||| Sbjct 876 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 911 >seq370 Length=5836 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 233 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 174 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||| ||||||| || ||||||||||||||||| | ||||| || Sbjct 173 CTCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAACGATTTC 114 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||| ||| || ||||||||| Sbjct 113 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTA 78 >seq555 Length=3447 Score = 122 bits (134), Expect = 8e-26 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||| Sbjct 1254 TTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGTACCTGA 1313 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || |||| ||||||||| |||||||||||||||| Sbjct 1314 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACT 1358 >seq1374 Length=1034 Score = 114 bits (126), Expect = 1e-23 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 456 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 397 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||| ||||||| || ||||||||||||||||| | ||| | | Sbjct 396 CTCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCCACGTACGGTTAC 337 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | | ||| | |||| ||||| | ||||||||| Sbjct 336 CAAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473591695720