Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq412 159 3e-37
seq370 141 9e-32
seq555 122 8e-26
seq1374 114 1e-23
>seq412
Length=5103
Score = 159 bits (176), Expect = 3e-37
Identities = 129/156 (83%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||||
Sbjct 756 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 815
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
|| || ||||| ||| |||||||||| ||||||||| |||||| | | |||||||
Sbjct 816 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 875
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | | ||| ||||||| ||||||||||||
Sbjct 876 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 911
>seq370
Length=5836
Score = 141 bits (156), Expect = 9e-32
Identities = 125/156 (80%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 233 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 174
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||| ||||||| || ||||||||||||||||| | ||||| ||
Sbjct 173 CTCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAACGATTTC 114
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| | ||| ||| ||| || |||||||||
Sbjct 113 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTA 78
>seq555
Length=3447
Score = 122 bits (134), Expect = 8e-26
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||
Sbjct 1254 TTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGTACCTGA 1313
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|||| || |||| ||||||||| ||||||||||||||||
Sbjct 1314 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACT 1358
>seq1374
Length=1034
Score = 114 bits (126), Expect = 1e-23
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 456 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 397
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||| ||||||| || ||||||||||||||||| | ||| | |
Sbjct 396 CTCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCCACGTACGGTTAC 337
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| | ||| | |||| ||||| | |||||||||
Sbjct 336 CAAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473591695720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |