Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq370 295 1e-77 seq1374 293 4e-77 seq555 288 2e-75 seq412 288 2e-75 seq1493 149 1e-33 seq1162 82.4 1e-13 >seq370 Length=5836 Score = 295 bits (326), Expect = 1e-77 Identities = 229/273 (84%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| || Sbjct 579 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 520 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||||| |||||| ||||| | | |||||||| | ||||||||||||||||||||||| Sbjct 519 TATGCCGTTGGCACGACAACAGATCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 460 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | |||||| |||| |||| ||||||| |||||| | |||||||||||||||||||| || Sbjct 459 AGGGACAGATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACG 400 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||| ||| ||| || |||||| ||||||||||| ||||||||||||| Sbjct 399 ACGTTCTGAACCCAACTCACGTACCGCTTTAAATGGCGAACAGCCATACCCTTGGGACCT 340 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || |||||||||||| Sbjct 339 GCTCCAGCCCCAGGATGCGATGAGCCGACATCG 307 >seq1374 Length=1034 Score = 293 bits (324), Expect = 4e-77 Identities = 224/265 (85%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| || ||||| ||| || | ||| Sbjct 794 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCGACGTAGCTACCCTGCCGTACACC 735 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | | ||| ||| |||||||| | |||||||||||||||||||||||| |||||| Sbjct 734 TGGCGGCATAACAGGTTCACCAGAGATACGTCCATCCCGGTCCTCTCGTACTAGGGACAG 675 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||| |||| ||||||| |||||| | |||||||||||||||||||| |||||||||| Sbjct 674 ATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTG 615 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||| ||| ||| || ||||||| ||||||||||| |||||||||||||| || |||| Sbjct 614 AACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 555 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 554 CCCAGGATGTGACGAGCCGACATCG 530 >seq555 Length=3447 Score = 288 bits (318), Expect = 2e-75 Identities = 228/274 (83%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | ||| Sbjct 906 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 965 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| | |||| | ||||||| | |||||||||||||| || |||||||||||||| Sbjct 966 CGGTGCTCCTGGCGGAACAACTGATACACCAGAGGTTTGTTCAAATCGGTCCTCTCGTAC 1025 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || ||||||||| || |||||| | | ||||| |||||||||||||| | Sbjct 1026 TAGATTCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 1085 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1086 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 1145 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 1146 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 1179 >seq412 Length=5103 Score = 288 bits (318), Expect = 2e-75 Identities = 228/274 (83%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| | Sbjct 409 GAGGCGCGCTTCCCGCTTAGATGCTTTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 468 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 469 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 528 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| | Sbjct 529 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 588 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||| Sbjct 589 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 648 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || ||| |||||||| Sbjct 649 GACTACAGCCCCAGGATGCGATGAGTCGACATCG 682 >seq1493 Length=882 Score = 149 bits (164), Expect = 1e-33 Identities = 146/186 (78%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| || ||||| | | || |||| |||| Sbjct 186 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACATAGCTACTCGGCAATGCCACTGGCG 127 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134 ||||| | | |||||||||| |||||| ||||||||||||||||| | || ||| | Sbjct 126 TGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 67 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||||| | | |||||||| |||||||||| ||||||||| ||||||| | |||| Sbjct 66 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 8 Query 195 CAGCTC 200 |||||| Sbjct 7 CAGCTC 2 >seq1162 Length=1364 Score = 82.4 bits (90), Expect = 1e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| ||| | Sbjct 90 GAGGGGGGCTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTACCCTG 31 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACC 91 |||||| |||||| ||||| | | |||| Sbjct 30 CTATGCCGTTGGCACGACAACAGATCCACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780786309160