Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq370 295 1e-77
seq1374 293 4e-77
seq555 288 2e-75
seq412 288 2e-75
seq1493 149 1e-33
seq1162 82.4 1e-13
>seq370
Length=5836
Score = 295 bits (326), Expect = 1e-77
Identities = 229/273 (84%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62
||| ||| ||| ||||||||||||||||| ||||||| ||| | ||||| ||| ||
Sbjct 579 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTATATAGCTACCCTGC 520
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
||||| |||||| ||||| | | |||||||| | |||||||||||||||||||||||
Sbjct 519 TATGCCGTTGGCACGACAACAGATCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 460
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| |||||| |||| |||| ||||||| |||||| | |||||||||||||||||||| ||
Sbjct 459 AGGGACAGATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACG 400
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||| ||| ||| || |||||| ||||||||||| |||||||||||||
Sbjct 399 ACGTTCTGAACCCAACTCACGTACCGCTTTAAATGGCGAACAGCCATACCCTTGGGACCT 340
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| ||||||||||||| || ||||||||||||
Sbjct 339 GCTCCAGCCCCAGGATGCGATGAGCCGACATCG 307
>seq1374
Length=1034
Score = 293 bits (324), Expect = 4e-77
Identities = 224/265 (85%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| ||||||||| |||||| |||||| |||| || ||||| ||| || | |||
Sbjct 794 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCGACGTAGCTACCCTGCCGTACACC 735
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
|||| | | ||| ||| |||||||| | |||||||||||||||||||||||| ||||||
Sbjct 734 TGGCGGCATAACAGGTTCACCAGAGATACGTCCATCCCGGTCCTCTCGTACTAGGGACAG 675
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
|||| |||| ||||||| |||||| | |||||||||||||||||||| ||||||||||
Sbjct 674 ATCCTTTCAATATTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTG 615
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
|||||| ||| ||| || ||||||| ||||||||||| |||||||||||||| || ||||
Sbjct 614 AACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 555
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| |||||||||||||||
Sbjct 554 CCCAGGATGTGACGAGCCGACATCG 530
>seq555
Length=3447
Score = 288 bits (318), Expect = 2e-75
Identities = 228/274 (83%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | |||
Sbjct 906 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 965
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| ||| | |||| | ||||||| | |||||||||||||| || ||||||||||||||
Sbjct 966 CGGTGCTCCTGGCGGAACAACTGATACACCAGAGGTTTGTTCAAATCGGTCCTCTCGTAC 1025
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| || ||||||||| || |||||| | | ||||| |||||||||||||| |
Sbjct 1026 TAGATTCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 1085
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 1145
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| || ||||||||||||| |||||||||||||||
Sbjct 1146 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 1179
>seq412
Length=5103
Score = 288 bits (318), Expect = 2e-75
Identities = 228/274 (83%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| |
Sbjct 409 GAGGCGCGCTTCCCGCTTAGATGCTTTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 468
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| |||| |||| ||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 469 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 528
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| |
Sbjct 529 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 588
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||
Sbjct 589 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 648
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| ||||||||||||| || ||| ||||||||
Sbjct 649 GACTACAGCCCCAGGATGCGATGAGTCGACATCG 682
>seq1493
Length=882
Score = 149 bits (164), Expect = 1e-33
Identities = 146/186 (78%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| ||||| || ||||| | | || |||| ||||
Sbjct 186 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACATAGCTACTCGGCAATGCCACTGGCG 127
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134
||||| | | |||||||||| |||||| ||||||||||||||||| | || ||| |
Sbjct 126 TGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 67
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194
||||||| | | |||||||| |||||||||| ||||||||| ||||||| | ||||
Sbjct 66 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 8
Query 195 CAGCTC 200
||||||
Sbjct 7 CAGCTC 2
>seq1162
Length=1364
Score = 82.4 bits (90), Expect = 1e-13
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| ||| |
Sbjct 90 GAGGGGGGCTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTACCCTG 31
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACC 91
|||||| |||||| ||||| | | ||||
Sbjct 30 CTATGCCGTTGGCACGACAACAGATCCACC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780786309160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |