Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002011.1
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
seq215 131 3e-28
seq90 113 7e-23
>seq215
Length=11604
Score = 131 bits (144), Expect = 3e-28
Identities = 194/274 (71%), Gaps = 1/274 (0%)
Strand=Plus/Minus
Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTC 68
|||||||||||| ||||| | || || ||| | |||| ||| |||||||| | || |
Sbjct 649 GCGGCCGCTGGACTTCGCCATCTTTCCCACGG-TGCTGCTGGTCTCGACCCTGTTCCGGC 591
Query 69 TGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCG 128
||| ||||| | ||||| |||||| || | | | |||||||||| ||||| | |
Sbjct 590 TGGGGCTGAACCTGGCCTCGACGCGGCTGATCCTCAGCAACGGCCAGGAAGGCCACGACA 531
Query 129 CTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCG 188
||||| || | |||||||||||||| ||| || |||| || || |||| | | |||
Sbjct 530 GCGCCGGCCAGATCATCCAGGCCTTCGGCGAGCTGATGATGGGTGGCAACTTCATCATCG 471
Query 189 GTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCG 248
| | | | ||||| |||||| || | | ||||| ||||| | |||||||| ||
Sbjct 470 GGGTGATCATCTTCGCCATCCTGCTGGTGGTGAACTTCGTGGTCATCACCAAGGGTGCGA 411
Query 249 GGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
|| || |||||||| || || || |||||
Sbjct 410 CCCGTATCGCCGAGGTGTCGGCCCGCTTCACCCT 377
>seq90
Length=45502
Score = 113 bits (124), Expect = 7e-23
Identities = 190/274 (69%), Gaps = 1/274 (0%)
Strand=Plus/Minus
Query 9 GCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTC 68
|||||||||||| ||||| | |||||||| | |||| ||| ||||||| || |
Sbjct 24426 GCGGCCGCTGGACTTCGCCATCTTCCCGACCG-TGCTGCTGGTCTCGACCCTTTACCGCC 24368
Query 69 TGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCG 128
||| ||||| | ||||| |||||| || | | | |||||||||| || || | |
Sbjct 24367 TGGGGCTGAACCTGGCCTCGACGCGGCTGATCCTCAGCAACGGCCAGGAAGGTCACGACA 24308
Query 129 CTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCG 188
|| || ||| | |||||||||||||| || || |||| || || |||| | | |||
Sbjct 24307 GCGCAGGCAAGATCATCCAGGCCTTCGGCGAACTGATGATGGGGGGCAACTTCATCATCG 24248
Query 189 GTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCG 248
| | | | ||||| |||||| || | | ||||| || || | |||||||||||
Sbjct 24247 GGGTGATCATCTTCGCCATCCTGCTGGTGGTGAACTTCGTCGTCATCACCAAGGGCGCGA 24188
Query 249 GGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
|| || ||||||| || || || |||||
Sbjct 24187 CCCGTATCGCCGAGGTCTCGGCCCGCTTCACCCT 24154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 809585804170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |