Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq400 282 1e-73
seq1666 271 2e-70
seq365 268 2e-69
seq412 233 5e-59
seq129 226 7e-57
seq902 212 2e-52
seq819 176 1e-41
seq1215 172 1e-40
seq1775 167 6e-39
seq1178 149 2e-33
>seq400
Length=5312
Score = 282 bits (312), Expect = 1e-73
Identities = 308/410 (75%), Gaps = 32/410 (8%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||||| || ||| ||||| |||| |||||||||||||||| |||||||| ||||||||
Sbjct 1813 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 1872
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1873 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1932
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|||||||||||||||||||||||||| ||||||||||| |||| || ||||| | |||
Sbjct 1933 GGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTACCTCACCA 1992
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | ||| || || | || | || | ||| | ||
Sbjct 1993 ACTAGCTAATCAGACGCGGGCCGCTCTAATGGCGATA------AATCTTTCCCCCGAAGG 2046
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
| || || |||||||||| |||||| ||||| || ||| |||||
Sbjct 2047 GC-----AC---ATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCAAAAGGCA 2098
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
|||||| |||||||||||||||||||| | ||||| || |
Sbjct 2099 CGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACTCCGAAG-----AGTT-------- 2144
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2145 ----CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 2190
>seq1666
Length=670
Score = 271 bits (300), Expect = 2e-70
Identities = 260/329 (79%), Gaps = 12/329 (4%)
Strand=Plus/Minus
Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147
|||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611
Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC--CCATCTGGGT 205
||| |||||||| || ||| || ||| ||| ||||||| |||||| ||||| |
Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATC--AGC 553
Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265
|| ||| | |||||||||||||||| |||| || | || | |||||||||
Sbjct 552 CGCTCTAGTAGCGCAAGGCCCGAAGGTCCCCTGCTTTCATCCTTAGATCTCATGCGGTAT 493
Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325
|||| || |||| ||| |||||||||| | | ||||| |||| | ||||||||||
Sbjct 492 TAGCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACC 433
Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385
||| |||||||||||||| | | | ||| |||||||||||||||||||||||||
Sbjct 432 CGTTCGCCACTCGTCAGC--ATCCG-AAG-----ACCTGTTACCGTTCGACTTGCATGTG 381
Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| | || ||||||||||||||||||||||
Sbjct 380 TAAAGCATGCCGCCAGCGTTCAATCTGAG 352
>seq365
Length=5917
Score = 268 bits (296), Expect = 2e-69
Identities = 312/416 (75%), Gaps = 15/416 (4%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||||||||||||||| || || |||||||| | |||||||||||||||||||||||
Sbjct 3397 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTTGCTGCATCAGGCTTGCGCCCATT 3456
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 3457 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 3516
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||| ||||| |||||||| || |||| ||||||||| |||| ||||||||| | |||
Sbjct 3517 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCA 3576
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCC---CGAAGGTCCCCCTCTT 241
|| |||| || | || ||||| | || | | | | | | | |
Sbjct 3577 ACAAGCTGATAGGCCGCGAGTCCATCCCGAACCGATAAATCTTTCCACCCACACACCATG 3636
Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301
||| || ||| ||| | ||||||| | |||||||||| | ||||||| |
Sbjct 3637 CGGTGATGGGAC-ATATCCAGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTTCGGG 3695
Query 302 GCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GC 358
||| ||| | || |||||||||||| |||||||| | | | ||||||||| ||
Sbjct 3696 GCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTCTT---CCACCCAGCAAGCTGGGC 3752
Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||| | |||||||||||||||||||| || ||||||||||||| |||||
Sbjct 3753 TTC-----ATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGAG 3803
>seq412
Length=5103
Score = 233 bits (258), Expect = 5e-59
Identities = 231/293 (79%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182
||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||
Sbjct 4448 GTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGC 4507
Query 183 CAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242
|||||||||||||| | | || |||| | || | | ||| |||||| ||||| ||||
Sbjct 4508 CAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTT 4567
Query 243 -GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301
| | | || |||||||||||||| |||||| |||||||||| | | |
Sbjct 4568 CACCCGTAGGTCG-TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGACTGG 4626
Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361
||| |||| | ||||||||||||||| ||||||||| || | || | | ||| | |
Sbjct 4627 GCACGTTCCGATACATTACTCACCCGTTCGCCACTCGCCACC--AGGACC--GCTCC--C 4680
Query 362 CTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| | ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 4681 GTGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 4733
>seq129
Length=23434
Score = 226 bits (250), Expect = 7e-57
Identities = 270/367 (74%), Gaps = 32/367 (9%)
Strand=Plus/Minus
Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107
|||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||| |||
Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373
Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313
Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227
| ||||||||| | |||||||||||||| | ||| || | | || |
Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATA------ 23259
Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287
|| | ||| | || | || || ||| |||| | |||||||||| | ||
Sbjct 23258 AATCTTTCCCCCGAAGGGC-----AC---ATTCGGCATTACCACCCGTTTCCAGGAGCTA 23207
Query 288 TCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAG 347
| || || ||||| |||||| |||||||||||||||||||| | |||||
Sbjct 23206 TTCCGAACCTAAAGGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACCCCGAAG 23148
Query 348 CAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407
| | |||||||||||||||||||||||||||||||||||||||
Sbjct 23147 ------GGT-----------CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCG 23105
Query 408 ATCTGAG 414
||||||
Sbjct 23104 CTCTGAG 23098
>seq902
Length=1850
Score = 212 bits (234), Expect = 2e-52
Identities = 304/423 (72%), Gaps = 28/423 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||| || |||| ||||| | ||||||||||||||| |||| || | ||||
Sbjct 121 TTTACAACCCAGAGGGCCGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTCCCTCCAT 180
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 181 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 240
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||| | | |||||||||| | |||| |||||||||| |||| ||| ||||||||||
Sbjct 241 TGGGGGATTCTCCTCTCAGAGCCCCTAGACATCGTCGCCTTGGTGAGCCGTTACCCCGCC 300
Query 184 AACTAGCTAAT----------CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-T 232
||||||||||| |||||| || |||| ||| | | | || |
Sbjct 301 AACTAGCTAATGTCACGCGAGCCCATC----TTAATCCTATAAATATTTGAACATTGGAT 356
Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292
|| || || | ||||||||| ||| | |||| || |||||||
Sbjct 357 AATGCT-----ATCCTGTGTTTTTATGCGGTGTTAATCCGAATTTCTTCGGGCTATCCCC 411
Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351
|| | ||| | ||| | | | |||| ||||||| ||||||| ||| | ||||
Sbjct 412 CTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCCACT-TTCA--TATCCAGC 468
Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411
|||||| | | ||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 469 AAGCTG---GATAATCCCGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCT 525
Query 412 GAG 414
|||
Sbjct 526 GAG 528
>seq819
Length=2095
Score = 176 bits (194), Expect = 1e-41
Identities = 155/192 (81%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||| ||| | || || | ||||||||||||||| ||||| |||| |||||
Sbjct 456 TTTACAACCCATAGGGCAGTCATCCTGCACGCGGCATGGCTGGTTCAGGGTTGCCCCCAT 397
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 396 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 337
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||| | ||| |||||||| || ||| |||| | || ||| |||| |||||| ||
Sbjct 336 TGGGGGATCACCCTCTCAGGCCCCCTAAAGATCACTGACTTGGTAGGCCGTTACCCTACC 277
Query 184 AACTAGCTAATC 195
||||| ||||||
Sbjct 276 AACTATCTAATC 265
>seq1215
Length=1293
Score = 172 bits (190), Expect = 1e-40
Identities = 235/329 (71%), Gaps = 32/329 (10%)
Strand=Plus/Plus
Query 86 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACC 145
|||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60
Query 146 AGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGT 205
||||| ||||||||||| |||| ||||||||| | |||||||||||||| | |||
Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120
Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265
||||| || || | || | ||| || ||| ||| ||||||
Sbjct 121 CCATCCTATTCCGATA------AATCTTTCCCCAAAAGG----GCG----TATCCGGTAT 166
Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325
|||| |||||||| ||||| || | || || |||||| |||||||||
Sbjct 167 TAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTTCCCACGTGTTACTCACC 226
Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385
|||| |||||| | ||||| || | |||||||||||||||||
Sbjct 227 CGTCTGCCACT-AACTCCGAAG-----AGTT------------CGTTCGACTTGCATGTG 268
Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||| ||||||||||||||||| ||||||
Sbjct 269 TTAAGCCTGCCGCCAGCGTTCGTTCTGAG 297
>seq1775
Length=549
Score = 167 bits (184), Expect = 6e-39
Identities = 140/172 (81%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82
|| || | ||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 419 TCATCCTGCACGCGGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTG 360
Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
||||||||||||||||||||| |||||||||||| ||||||||| | || ||||||||
Sbjct 359 CTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAG 300
Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
| ||| ||| ||| || ||| ||| ||||| ||||||| |||||
Sbjct 299 GACCCCTACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAAT 248
>seq1178
Length=1334
Score = 149 bits (164), Expect = 2e-33
Identities = 214/305 (70%), Gaps = 34/305 (11%)
Strand=Plus/Plus
Query 110 TCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGG 169
||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| |
Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60
Query 170 GCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAA 229
||||||||||| |||||||||||||| | ||| ||||| | | || | ||
Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATA------AA 114
Query 230 GGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATC 289
| ||| | | || ||| ||| |||||||||| |||||||| |||||
Sbjct 115 TCTTTCCCCCGTAGG----GCG----TATACGGTATTAGCAGTCGTTTCCAACTGTTATT 166
Query 290 CCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCA 349
|| || ||| || |||||| | ||||||||||||| ||| ||
Sbjct 167 CCGTAGCAAAAGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCT------------- 213
Query 350 GCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT 409
| ||| | | || ||||||||||||||||| ||||||||||||||||| |
Sbjct 214 -----CCCCTTGCGG--GGCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGTT 266
Query 410 CTGAG 414
|||||
Sbjct 267 CTGAG 271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222377874560
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