Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq400 282 1e-73 seq1666 271 2e-70 seq365 268 2e-69 seq412 233 5e-59 seq129 226 7e-57 seq902 212 2e-52 seq819 176 1e-41 seq1215 172 1e-40 seq1775 167 6e-39 seq1178 149 2e-33 >seq400 Length=5312 Score = 282 bits (312), Expect = 1e-73 Identities = 308/410 (75%), Gaps = 32/410 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 1813 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 1872 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1873 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1932 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||||||||||||||||||||| ||||||||||| |||| || ||||| | ||| Sbjct 1933 GGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTACCTCACCA 1992 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| || || | || | || | ||| | || Sbjct 1993 ACTAGCTAATCAGACGCGGGCCGCTCTAATGGCGATA------AATCTTTCCCCCGAAGG 2046 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||||| || ||| ||||| Sbjct 2047 GC-----AC---ATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCAAAAGGCA 2098 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| |||||||||||||||||||| | ||||| || | Sbjct 2099 CGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACTCCGAAG-----AGTT-------- 2144 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2145 ----CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 2190 >seq1666 Length=670 Score = 271 bits (300), Expect = 2e-70 Identities = 260/329 (79%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611 Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC--CCATCTGGGT 205 ||| |||||||| || ||| || ||| ||| ||||||| |||||| ||||| | Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATC--AGC 553 Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265 || ||| | |||||||||||||||| |||| || | || | ||||||||| Sbjct 552 CGCTCTAGTAGCGCAAGGCCCGAAGGTCCCCTGCTTTCATCCTTAGATCTCATGCGGTAT 493 Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325 |||| || |||| ||| |||||||||| | | ||||| |||| | |||||||||| Sbjct 492 TAGCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACC 433 Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385 ||| |||||||||||||| | | | ||| ||||||||||||||||||||||||| Sbjct 432 CGTTCGCCACTCGTCAGC--ATCCG-AAG-----ACCTGTTACCGTTCGACTTGCATGTG 381 Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || |||||||||||||||||||||| Sbjct 380 TAAAGCATGCCGCCAGCGTTCAATCTGAG 352 >seq365 Length=5917 Score = 268 bits (296), Expect = 2e-69 Identities = 312/416 (75%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 3397 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTTGCTGCATCAGGCTTGCGCCCATT 3456 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 3457 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 3516 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| ||||||||| |||| ||||||||| | ||| Sbjct 3517 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCA 3576 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCC---CGAAGGTCCCCCTCTT 241 || |||| || | || ||||| | || | | | | | | | | Sbjct 3577 ACAAGCTGATAGGCCGCGAGTCCATCCCGAACCGATAAATCTTTCCACCCACACACCATG 3636 Query 242 TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 ||| || ||| ||| | ||||||| | |||||||||| | ||||||| | Sbjct 3637 CGGTGATGGGAC-ATATCCAGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTTCGGG 3695 Query 302 GCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GC 358 ||| ||| | || |||||||||||| |||||||| | | | ||||||||| || Sbjct 3696 GCAGGTTACTCACGTGTTACTCACCCGTTCGCCACTCTT---CCACCCAGCAAGCTGGGC 3752 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct 3753 TTC-----ATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGAG 3803 >seq412 Length=5103 Score = 233 bits (258), Expect = 5e-59 Identities = 231/293 (79%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||||||| Sbjct 4448 GTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGC 4507 Query 183 CAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||||||||||||| | | || |||| | || | | ||| |||||| ||||| |||| Sbjct 4508 CAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTT 4567 Query 243 -GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 | | | || |||||||||||||| |||||| |||||||||| | | | Sbjct 4568 CACCCGTAGGTCG-TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGACTGG 4626 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361 ||| |||| | ||||||||||||||| ||||||||| || | || | | ||| | | Sbjct 4627 GCACGTTCCGATACATTACTCACCCGTTCGCCACTCGCCACC--AGGACC--GCTCC--C 4680 Query 362 CTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 4681 GTGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 4733 >seq129 Length=23434 Score = 226 bits (250), Expect = 7e-57 Identities = 270/367 (74%), Gaps = 32/367 (9%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||| ||| Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227 | ||||||||| | |||||||||||||| | ||| || | | || | Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATA------ 23259 Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287 || | ||| | || | || || ||| |||| | |||||||||| | || Sbjct 23258 AATCTTTCCCCCGAAGGGC-----AC---ATTCGGCATTACCACCCGTTTCCAGGAGCTA 23207 Query 288 TCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAG 347 | || || ||||| |||||| |||||||||||||||||||| | ||||| Sbjct 23206 TTCCGAACCTAAAGGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT-AACCCCGAAG 23148 Query 348 CAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 | | ||||||||||||||||||||||||||||||||||||||| Sbjct 23147 ------GGT-----------CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCG 23105 Query 408 ATCTGAG 414 |||||| Sbjct 23104 CTCTGAG 23098 >seq902 Length=1850 Score = 212 bits (234), Expect = 2e-52 Identities = 304/423 (72%), Gaps = 28/423 (7%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| || |||| ||||| | ||||||||||||||| |||| || | |||| Sbjct 121 TTTACAACCCAGAGGGCCGTCTTCCTGCACGCGGCATGGCTGGTTCAGAGTTCCCTCCAT 180 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 181 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 240 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | | |||||||||| | |||| |||||||||| |||| ||| |||||||||| Sbjct 241 TGGGGGATTCTCCTCTCAGAGCCCCTAGACATCGTCGCCTTGGTGAGCCGTTACCCCGCC 300 Query 184 AACTAGCTAAT----------CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGG-T 232 ||||||||||| |||||| || |||| ||| | | | || | Sbjct 301 AACTAGCTAATGTCACGCGAGCCCATC----TTAATCCTATAAATATTTGAACATTGGAT 356 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 || || || | ||||||||| ||| | |||| || ||||||| Sbjct 357 AATGCT-----ATCCTGTGTTTTTATGCGGTGTTAATCCGAATTTCTTCGGGCTATCCCC 411 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 || | ||| | ||| | | | |||| ||||||| ||||||| ||| | |||| Sbjct 412 CTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGCGCCACT-TTCA--TATCCAGC 468 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 |||||| | | ||||||||||||||||| ||||||||||||| |||||||| || Sbjct 469 AAGCTG---GATAATCCCGTTCGACTTGCATGTATTAGGCCTGCCGCTAGCGTTCATCCT 525 Query 412 GAG 414 ||| Sbjct 526 GAG 528 >seq819 Length=2095 Score = 176 bits (194), Expect = 1e-41 Identities = 155/192 (81%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCT-TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| | || || | ||||||||||||||| ||||| |||| ||||| Sbjct 456 TTTACAACCCATAGGGCAGTCATCCTGCACGCGGCATGGCTGGTTCAGGGTTGCCCCCAT 397 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 396 TGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 337 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| |||| | || ||| |||| |||||| || Sbjct 336 TGGGGGATCACCCTCTCAGGCCCCCTAAAGATCACTGACTTGGTAGGCCGTTACCCTACC 277 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 276 AACTATCTAATC 265 >seq1215 Length=1293 Score = 172 bits (190), Expect = 1e-40 Identities = 235/329 (71%), Gaps = 32/329 (10%) Strand=Plus/Plus Query 86 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACC 145 |||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60 Query 146 AGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGT 205 ||||| ||||||||||| |||| ||||||||| | |||||||||||||| | ||| Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120 Query 206 TCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTAT 265 ||||| || || | || | ||| || ||| ||| |||||| Sbjct 121 CCATCCTATTCCGATA------AATCTTTCCCCAAAAGG----GCG----TATCCGGTAT 166 Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325 |||| |||||||| ||||| || | || || |||||| ||||||||| Sbjct 167 TAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTTCCCACGTGTTACTCACC 226 Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385 |||| |||||| | ||||| || | ||||||||||||||||| Sbjct 227 CGTCTGCCACT-AACTCCGAAG-----AGTT------------CGTTCGACTTGCATGTG 268 Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| |||||| Sbjct 269 TTAAGCCTGCCGCCAGCGTTCGTTCTGAG 297 >seq1775 Length=549 Score = 167 bits (184), Expect = 6e-39 Identities = 140/172 (81%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 || || | ||||||||||||||| |||||||||||||||||| ||||||||| ||||| Sbjct 419 TCATCCTGCACGCGGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTG 360 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||||||||||||||||||| |||||||||||| ||||||||| | || |||||||| Sbjct 359 CTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAG 300 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | ||| ||| ||| || ||| ||| ||||| ||||||| ||||| Sbjct 299 GACCCCTACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAAT 248 >seq1178 Length=1334 Score = 149 bits (164), Expect = 2e-33 Identities = 214/305 (70%), Gaps = 34/305 (11%) Strand=Plus/Plus Query 110 TCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGG 169 ||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| | Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60 Query 170 GCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAA 229 ||||||||||| |||||||||||||| | ||| ||||| | | || | || Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATA------AA 114 Query 230 GGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATC 289 | ||| | | || ||| ||| |||||||||| |||||||| ||||| Sbjct 115 TCTTTCCCCCGTAGG----GCG----TATACGGTATTAGCAGTCGTTTCCAACTGTTATT 166 Query 290 CCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCA 349 || || ||| || |||||| | ||||||||||||| ||| || Sbjct 167 CCGTAGCAAAAGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCT------------- 213 Query 350 GCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAAT 409 | ||| | | || ||||||||||||||||| ||||||||||||||||| | Sbjct 214 -----CCCCTTGCGG--GGCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGTT 266 Query 410 CTGAG 414 ||||| Sbjct 267 CTGAG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222377874560