Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq365 414 3e-113
seq400 390 3e-106
seq819 246 9e-63
seq129 221 4e-55
seq1775 215 2e-53
seq902 176 1e-41
seq1215 168 2e-39
seq1666 109 2e-21
seq1178 104 7e-20
seq412 80.6 8e-13
>seq365
Length=5917
Score = 414 bits (458), Expect = 3e-113
Identities = 382/480 (80%), Gaps = 8/480 (2%)
Strand=Plus/Minus
Query 19 GAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACAT 78
|||||| |||| ||||||||||||| |||| ||||||||||| | || | ||||||
Sbjct 3735 GAAGAGTGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCCGAACTCTGGGATAAGCG 3676
Query 79 ACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAG 137
|||| | ||||||| |||| | | | | | |||||||| | | ||||
Sbjct 3675 CTGGAAACGGCGTCTAATACTGGATA-TGTCCCATCACCGCATGGTGTGTGGGTGGAAAG 3617
Query 138 CTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC 197
| |||| | |||| ||| |||| | || |||| |||||| |||||| |||| |||
Sbjct 3616 ATTTATCGGTTCGGGATGGACTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACC 3557
Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257
|||||||||| ||||||| ||||||||||||| |||||||| ||| ||||||||||||
Sbjct 3556 AAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGG 3497
Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3496 CCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC 3437
Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA--- 374
|||||||||||||||| ||||| ||||||||||| ||||| |||| | | ||||
Sbjct 3436 AGCAACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTTAGTAGGGAAGAA 3377
Query 375 --GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432
|| | ||||||||| || || |||| ||||||||||||||||||||||||||||||
Sbjct 3376 GCGAAAGTGACGGTACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTA 3317
Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|||||||||| || |||||| |||||||||| | |||||||||| | |||||| || ||
Sbjct 3316 ATACGTAGGGTGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTT 3258
>seq400
Length=5312
Score = 390 bits (432), Expect = 3e-106
Identities = 293/343 (85%), Gaps = 1/343 (0%)
Strand=Plus/Minus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |
Sbjct 2012 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAAGCTCACCAAGGCGACGATCAGTAGCTG 1953
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
|||||||| ||| | |||||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 1952 GTCTGAGAGGATGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 1893
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337
||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| |||
Sbjct 1892 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 1833
Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397
||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || |
Sbjct 1832 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 1773
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1772 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 1713
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||||| |||||||||||| ||||||| || | |||||||
Sbjct 1712 GAATTACT-GGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTC 1671
>seq819
Length=2095
Score = 246 bits (272), Expect = 9e-63
Identities = 352/491 (72%), Gaps = 26/491 (5%)
Strand=Plus/Plus
Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80
||||||||| ||||||| | ||| |||| | ||||| || | || ||||| | |
Sbjct 120 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTACCTTTATCAGGGGGATAGCCTTT 179
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAGCT 139
||||||| | |||||| |||||||| | |||| | || ||| ||| ||
Sbjct 180 CGAAAGGAAGATTAATACCCCATAATATAAACCAAG-GCATCTT-GATTTATTGAAAACT 237
Query 140 CCGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198
|||| || | || ||| | | |||| |||||| ||||||||| ||||||||| |||||
Sbjct 238 CCGGTGG-ATAGAGATGGGCACGCGCAAGATTAGATAGTTGGTAGGGTAACGGCCTACCA 296
Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258
|| | |||| ||| | ||||||||||||||| ||||| ||| ||||||||||||
Sbjct 297 AGTCAGTGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGA 356
Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318
||| ||||||||||||||||||||| ||||||||| ||||||| || ||||| ||
Sbjct 357 CCAGACTCCTACGGGAGGCAGCAGTAAGGAATATTGGTCAATGGGGGCAACCCTGAACCA 416
Query 319 GCAACGCCGCGTGAGCGATGA-AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377
|| | |||||||| ||||| | ||| |||| ||||| || | ||| |||| |
Sbjct 417 GCCATGCCGCGTGCAGGATGACTGCCCTATGGGTTGTAAACTGCTTTTGTCAGGGAATAA 476
Query 378 A-------------------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGC 418
| ||| |||| ||| || ||| ||||||||| |||||
Sbjct 477 ACCTTTCCACGTGTGGAAAGCTGAATGTACCTGAAGAATAAGGATCGGCTAACTCCGTGC 536
Query 419 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGG 478
||||||||||||||||||| ||| | ||||||||||||| ||| | ||| |||||||
Sbjct 537 CAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGG 595
Query 479 TGCGTAGGTGG 489
|||||||| ||
Sbjct 596 TGCGTAGGCGG 606
>seq129
Length=23434
Score = 221 bits (244), Expect = 4e-55
Identities = 143/157 (91%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |
Sbjct 23276 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCAGTAGCTG 23335
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
|||||||| ||| | |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 23336 GTCTGAGAGGATGACCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 23395
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314
||||||||||||| |||| |||||||| |||||||||
Sbjct 23396 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 23432
>seq1775
Length=549
Score = 215 bits (238), Expect = 2e-53
Identities = 232/309 (75%), Gaps = 21/309 (7%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||| ||||| ||||||||||||||||||||||||||| ||| ||| |||| | ||
Sbjct 241 GCGTCCCATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACGATGATGGGTAGGGGTCC 300
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||||| |||| ||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 301 TGAGAGGGAGATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 360
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||| ||||||||| |||||||| |||||||| |||| | |||||||| |||||
Sbjct 361 AGTGAGGAATATTGGTCAATGGGCGCAAGCCTGAACCAGCCATGCCGCGTGCAGGATGAC 420
Query 341 G-GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------------TAA-- 379
| || || ||||| || | | ||||||| |||
Sbjct 421 GCATCTATGGTGTGTAAACTGCTTTTGTACAGGAAGAAACCTACTCTCGTGAGAGTAAGC 480
Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439
||| |||||| | || |||| |||||||||| |||||||||||||||||||||||| |
Sbjct 481 TGAAGGTACTATACGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 540
Query 440 GGGGGCTAG 448
||| || ||
Sbjct 541 GGGTGCAAG 549
>seq902
Length=1850
Score = 176 bits (194), Expect = 1e-41
Identities = 234/327 (72%), Gaps = 20/327 (6%)
Strand=Plus/Minus
Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211
||| | | ||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 327 GATGGGCTCGCGTGACATTAGCTAGTTGGCGGGGTAACGGCTCACCAAGGCGACGATGTC 268
Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271
||| | |||||||| ||| ||||| ||| |||||||||||| ||| |||||||||
Sbjct 267 TAGGGGCTCTGAGAGGAGAATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACG 208
Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
|||||||||||| ||||||||| |||||| || |||| |||| | ||||||||
Sbjct 207 GGAGGCAGCAGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTG 148
Query 332 AGCGATGAAGGCCTTC-GGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------- 376
|| || |||| || |||| ||||| || | | |||| |
Sbjct 147 CAGGAAGACGGCCCTCTGGGTTGTAAACTGCTTTTATTCGGGAATAAACCTTATTACGTG 88
Query 377 TAA-----TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT 431
||| ||| |||| |||| ||| ||||||||| ||||||||||||||||||
Sbjct 87 TAATAAGCTGAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGT 28
Query 432 AATACGTAGGGGGCTAGCGTTATCCGG 458
|||||| ||| | ||||||||||||
Sbjct 27 AATACGGAGGATCCAAGCGTTATCCGG 1
>seq1215
Length=1293
Score = 168 bits (186), Expect = 2e-39
Identities = 199/267 (75%), Gaps = 18/267 (7%)
Strand=Plus/Minus
Query 10 CTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACAC 69
|||||||||| || ||| |||||||||||||| |||||| ||||| |||||| |
Sbjct 249 CTCTTCGGAGTT-AGTGGCAGACGGGTGAGTAACACGTGGG-AACCTACCCTGTTCTTCG 192
Query 70 GGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAG 129
| |||||| | |||| || ||||||||| |||| ||||| | | |||
Sbjct 191 GAATAACACATGGAAACGTGTGCTAATACCGGATACGCC-CTTTTGGGGAA----AGATT 137
Query 130 TATCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAAC 189
|||| || | ||||| | ||||||| ||||||||||||||| ||||||
Sbjct 136 TATC-----------GGAATAGGATGGGCCCGCGTAAGATTAGCTAGTTGGTGAGGTAAT 88
Query 190 GGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTG 249
|||| ||||||||||||||| |||| | |||||||| ||||| |||||| ||| ||||
Sbjct 87 GGCTCACCAAGGCGACGATCTTTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTG 28
Query 250 AGACACGGTCCAAACTCCTACGGGAGG 276
|||||||| ||| ||||||||| ||||
Sbjct 27 AGACACGGCCCAGACTCCTACGAGAGG 1
>seq1666
Length=670
Score = 109 bits (120), Expect = 2e-21
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226
|||||| |||||||| | ||| |||||||||| |||||||| ||||| | |||||||
Sbjct 563 GATTAGGTAGTTGGTGGGATAAAAGCTTACCAAGCCGACGATCTGTAGCTGGTCTGAGAG 622
Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274
| || | |||||| ||| |||||||||||| ||| ||||||||||||
Sbjct 623 GACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGA 670
>seq1178
Length=1334
Score = 104 bits (114), Expect = 7e-20
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| |
Sbjct 95 CCCGCGTAAGATTAGCTAGTTGGTGGGGTAATGGCCTACCAAGGCGACGATCTTTAGCTG 36
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252
|||||||| ||||| |||||| ||| |||||||
Sbjct 35 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGA 1
>seq412
Length=5103
Score = 80.6 bits (88), Expect = 8e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222
||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | |||
Sbjct 4524 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 4465
Query 223 AGAGGGTGATCGGCCAC 239
||||| ||||| |||||
Sbjct 4464 AGAGGATGATCAGCCAC 4448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497572893440
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