Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq365 414 3e-113 seq400 390 3e-106 seq819 246 9e-63 seq129 221 4e-55 seq1775 215 2e-53 seq902 176 1e-41 seq1215 168 2e-39 seq1666 109 2e-21 seq1178 104 7e-20 seq412 80.6 8e-13 >seq365 Length=5917 Score = 414 bits (458), Expect = 3e-113 Identities = 382/480 (80%), Gaps = 8/480 (2%) Strand=Plus/Minus Query 19 GAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACAT 78 |||||| |||| ||||||||||||| |||| ||||||||||| | || | |||||| Sbjct 3735 GAAGAGTGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCCGAACTCTGGGATAAGCG 3676 Query 79 ACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAG 137 |||| | ||||||| |||| | | | | | |||||||| | | |||| Sbjct 3675 CTGGAAACGGCGTCTAATACTGGATA-TGTCCCATCACCGCATGGTGTGTGGGTGGAAAG 3617 Query 138 CTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC 197 | |||| | |||| ||| |||| | || |||| |||||| |||||| |||| ||| Sbjct 3616 ATTTATCGGTTCGGGATGGACTCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACC 3557 Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 |||||||||| ||||||| ||||||||||||| |||||||| ||| |||||||||||| Sbjct 3556 AAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGG 3497 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3496 CCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGC 3437 Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA--- 374 |||||||||||||||| ||||| ||||||||||| ||||| |||| | | |||| Sbjct 3436 AGCAACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTTAGTAGGGAAGAA 3377 Query 375 --GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 || | ||||||||| || || |||| |||||||||||||||||||||||||||||| Sbjct 3376 GCGAAAGTGACGGTACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTA 3317 Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||||||| || |||||| |||||||||| | |||||||||| | |||||| || || Sbjct 3316 ATACGTAGGGTGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTT 3258 >seq400 Length=5312 Score = 390 bits (432), Expect = 3e-106 Identities = 293/343 (85%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| | Sbjct 2012 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAAGCTCACCAAGGCGACGATCAGTAGCTG 1953 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||| | |||||| ||| |||||||||||| ||| ||||||||||||||| Sbjct 1952 GTCTGAGAGGATGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 1893 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 1892 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 1833 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 1832 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 1773 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 1772 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 1713 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||||| ||||||| || | ||||||| Sbjct 1712 GAATTACT-GGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTC 1671 >seq819 Length=2095 Score = 246 bits (272), Expect = 9e-63 Identities = 352/491 (72%), Gaps = 26/491 (5%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||||||||| ||||||| | ||| |||| | ||||| || | || ||||| | | Sbjct 120 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTACCTTTATCAGGGGGATAGCCTTT 179 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAGCT 139 ||||||| | |||||| |||||||| | |||| | || ||| ||| || Sbjct 180 CGAAAGGAAGATTAATACCCCATAATATAAACCAAG-GCATCTT-GATTTATTGAAAACT 237 Query 140 CCGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198 |||| || | || ||| | | |||| |||||| ||||||||| ||||||||| ||||| Sbjct 238 CCGGTGG-ATAGAGATGGGCACGCGCAAGATTAGATAGTTGGTAGGGTAACGGCCTACCA 296 Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258 || | |||| ||| | ||||||||||||||| ||||| ||| |||||||||||| Sbjct 297 AGTCAGTGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGA 356 Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 ||| ||||||||||||||||||||| ||||||||| ||||||| || ||||| || Sbjct 357 CCAGACTCCTACGGGAGGCAGCAGTAAGGAATATTGGTCAATGGGGGCAACCCTGAACCA 416 Query 319 GCAACGCCGCGTGAGCGATGA-AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 || | |||||||| ||||| | ||| |||| ||||| || | ||| |||| | Sbjct 417 GCCATGCCGCGTGCAGGATGACTGCCCTATGGGTTGTAAACTGCTTTTGTCAGGGAATAA 476 Query 378 A-------------------ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGC 418 | ||| |||| ||| || ||| ||||||||| ||||| Sbjct 477 ACCTTTCCACGTGTGGAAAGCTGAATGTACCTGAAGAATAAGGATCGGCTAACTCCGTGC 536 Query 419 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGG 478 ||||||||||||||||||| ||| | ||||||||||||| ||| | ||| ||||||| Sbjct 537 CAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGGATTTA-TTGGGTTTAAAGGG 595 Query 479 TGCGTAGGTGG 489 |||||||| || Sbjct 596 TGCGTAGGCGG 606 >seq129 Length=23434 Score = 221 bits (244), Expect = 4e-55 Identities = 143/157 (91%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | Sbjct 23276 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCAGTAGCTG 23335 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||| | |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 23336 GTCTGAGAGGATGACCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 23395 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||||||||| |||| |||||||| ||||||||| Sbjct 23396 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 23432 >seq1775 Length=549 Score = 215 bits (238), Expect = 2e-53 Identities = 232/309 (75%), Gaps = 21/309 (7%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||| ||||| ||||||||||||||||||||||||||| ||| ||| |||| | || Sbjct 241 GCGTCCCATTAGTTAGTTGGTAAGGTAACGGCTTACCAAGACGATGATGGGTAGGGGTCC 300 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||||| |||| ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 301 TGAGAGGGAGATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 360 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||||||| |||||||| |||||||| |||| | |||||||| ||||| Sbjct 361 AGTGAGGAATATTGGTCAATGGGCGCAAGCCTGAACCAGCCATGCCGCGTGCAGGATGAC 420 Query 341 G-GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------------TAA-- 379 | || || ||||| || | | ||||||| ||| Sbjct 421 GCATCTATGGTGTGTAAACTGCTTTTGTACAGGAAGAAACCTACTCTCGTGAGAGTAAGC 480 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||| |||||| | || |||| |||||||||| |||||||||||||||||||||||| | Sbjct 481 TGAAGGTACTATACGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGA 540 Query 440 GGGGGCTAG 448 ||| || || Sbjct 541 GGGTGCAAG 549 >seq902 Length=1850 Score = 176 bits (194), Expect = 1e-41 Identities = 234/327 (72%), Gaps = 20/327 (6%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | | ||||| ||||||||||||| |||||||||| |||||||||||||| Sbjct 327 GATGGGCTCGCGTGACATTAGCTAGTTGGCGGGGTAACGGCTCACCAAGGCGACGATGTC 268 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 ||| | |||||||| ||| ||||| ||| |||||||||||| ||| ||||||||| Sbjct 267 TAGGGGCTCTGAGAGGAGAATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACG 208 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 |||||||||||| ||||||||| |||||| || |||| |||| | |||||||| Sbjct 207 GGAGGCAGCAGTAAGGAATATTGGTCAATGGAGGGAACTCTGAACCAGCCATGCCGCGTG 148 Query 332 AGCGATGAAGGCCTTC-GGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------- 376 || || |||| || |||| ||||| || | | |||| | Sbjct 147 CAGGAAGACGGCCCTCTGGGTTGTAAACTGCTTTTATTCGGGAATAAACCTTATTACGTG 88 Query 377 TAA-----TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGT 431 ||| ||| |||| |||| ||| ||||||||| |||||||||||||||||| Sbjct 87 TAATAAGCTGAATGTACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGT 28 Query 432 AATACGTAGGGGGCTAGCGTTATCCGG 458 |||||| ||| | |||||||||||| Sbjct 27 AATACGGAGGATCCAAGCGTTATCCGG 1 >seq1215 Length=1293 Score = 168 bits (186), Expect = 2e-39 Identities = 199/267 (75%), Gaps = 18/267 (7%) Strand=Plus/Minus Query 10 CTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACAC 69 |||||||||| || ||| |||||||||||||| |||||| ||||| |||||| | Sbjct 249 CTCTTCGGAGTT-AGTGGCAGACGGGTGAGTAACACGTGGG-AACCTACCCTGTTCTTCG 192 Query 70 GGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAG 129 | |||||| | |||| || ||||||||| |||| ||||| | | ||| Sbjct 191 GAATAACACATGGAAACGTGTGCTAATACCGGATACGCC-CTTTTGGGGAA----AGATT 137 Query 130 TATCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAAC 189 |||| || | ||||| | ||||||| ||||||||||||||| |||||| Sbjct 136 TATC-----------GGAATAGGATGGGCCCGCGTAAGATTAGCTAGTTGGTGAGGTAAT 88 Query 190 GGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTG 249 |||| ||||||||||||||| |||| | |||||||| ||||| |||||| ||| |||| Sbjct 87 GGCTCACCAAGGCGACGATCTTTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTG 28 Query 250 AGACACGGTCCAAACTCCTACGGGAGG 276 |||||||| ||| ||||||||| |||| Sbjct 27 AGACACGGCCCAGACTCCTACGAGAGG 1 >seq1666 Length=670 Score = 109 bits (120), Expect = 2e-21 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||||| | ||| |||||||||| |||||||| ||||| | ||||||| Sbjct 563 GATTAGGTAGTTGGTGGGATAAAAGCTTACCAAGCCGACGATCTGTAGCTGGTCTGAGAG 622 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA 274 | || | |||||| ||| |||||||||||| ||| |||||||||||| Sbjct 623 GACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGA 670 >seq1178 Length=1334 Score = 104 bits (114), Expect = 7e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| | Sbjct 95 CCCGCGTAAGATTAGCTAGTTGGTGGGGTAATGGCCTACCAAGGCGACGATCTTTAGCTG 36 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 |||||||| ||||| |||||| ||| ||||||| Sbjct 35 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGA 1 >seq412 Length=5103 Score = 80.6 bits (88), Expect = 8e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 4524 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 4465 Query 223 AGAGGGTGATCGGCCAC 239 ||||| ||||| ||||| Sbjct 4464 AGAGGATGATCAGCCAC 4448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497572893440