Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq400 430 3e-118 seq365 347 3e-93 seq819 224 2e-56 seq583 179 9e-43 seq902 73.4 1e-10 >seq400 Length=5312 Score = 430 bits (476), Expect = 3e-118 Identities = 336/400 (84%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1776 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 1717 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||||| ||||||| || | ||||||||||||||||| | Sbjct 1716 CTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTCAGAGGTGAAATCCC 1657 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | |||||||||| || ||||| ||||| |||| | || |||| ||| || | ||| Sbjct 1656 AGGGCTCAACCCTGGAACTGCCTTTGATACTGGCGATCTTGAGTATGAGAGAGGTATGTG 1597 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 1596 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 1537 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | |||| | |||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1536 ACATACTGGCTCATTACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1477 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||| | |||| ||||||| |||| | | || Sbjct 1476 ACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGCTGCAT--GCAGTTCG 1419 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| |||| | ||| ||||||||||| Sbjct 1418 GTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTA 1379 >seq365 Length=5917 Score = 347 bits (384), Expect = 3e-93 Identities = 316/397 (80%), Gaps = 1/397 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 3351 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCG 3292 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||| ||||||||||| | |||||| || || | ||| | |||||| | || Sbjct 3291 GAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCTGCTGTGAAAACCCGAGG 3232 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| |||| |||| | | || | |||||||||| | ||||| | |||||| Sbjct 3231 CTCAACCTCGGGCCTGCAGTGGGTACGGGCAAGCTAGAGTGCGGTAGGGGAGATTGGAAT 3172 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||| |||||||||||||||||| |||||| |||||||||||| |||||||||| | | Sbjct 3171 TCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGATGGCGAAGGCAGATC 3112 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | ||||||||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 3111 TCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAACAGGATTAGATACCC 3052 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGC-GCATAAGTGCTCCGGTG 371 |||||||||| |||||||||| || ||||| ||| ||| | | | | | | ||| Sbjct 3051 TGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTTCCACGGTTTCTGTG 2992 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| |||||| ||||| || ||||||||||| Sbjct 2991 TCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTA 2955 >seq819 Length=2095 Score = 224 bits (248), Expect = 2e-56 Identities = 261/351 (74%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || ||| ||||||||| |||||||||||||||||||||||| ||| | Sbjct 504 TACCTGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 563 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||||||||| ||| |||| ||||||||||||||| || |||||||| ||| Sbjct 564 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCCTATAAGTCAGTGGT 623 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCA---GG 177 ||||| | ||| ||| | | ||| ||||| |||| ||| || || | | | Sbjct 624 GAAAGACGGCAGCTTAACTGTCGCAGTGCCTTTGATACTGTAGGACTTGAATCTATTTGA 683 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||| ||||||||||||||| ||||||| ||||||| Sbjct 684 AGTGG---GCGGAATAAGACAAGTAGCGGTGAAATGCATAGATATGTCTTAGAACACCGA 740 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 | |||||||| ||| || | | | |||| |||| || |||||||||||||| | || Sbjct 741 TTGCGAAGGCAGCTCACTAAGTTATTATTGACGCTGATGCACGAAAGCGTGGGGATCGAA 800 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||||||||||||||||||||||| |||||||||| ||| | ||| Sbjct 801 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGT 851 Score = 132 bits (146), Expect = 1e-28 Identities = 119/147 (81%), Gaps = 12/147 (8%) Strand=Plus/Plus Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1174 TGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAGTCCACGC 1233 Query 326 CGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC--AGCAAA 381 | ||||||||||||||| | ||| | | ||| | | || || || ||| || Sbjct 1234 CCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCTAAGCGAA 1285 Query 382 CGCAATAAGTATTCCACCTGGGGAGTA 408 || |||||||||||||||||||||| Sbjct 1286 AGCGTTAAGTATTCCACCTGGGGAGTA 1312 Score = 116 bits (128), Expect = 9e-24 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302 ||||| |||| || | | | |||| ||||||| |||||||||||||||| ||||||| Sbjct 952 AAGGCAGCTTACTATGGTCTTATTGACGCTGAGGCACGAAAGCGTGGGGAGCGAACAGGA 1011 Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 |||||||||||||||||||||||||||||||||| Sbjct 1012 TTAGATACCCTGGTAGTCCACGCCGTAAACGATG 1045 >seq583 Length=3271 Score = 179 bits (198), Expect = 9e-43 Identities = 148/177 (84%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 177 GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 |||||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 3190 GAGGGGGA--TGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCG 3133 Query 237 GTGGCGAAGGCGGCTTGCTGGAC-TGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 |||||||||| |||||| |||| ||||| || | || ||||||||||||||||| Sbjct 3132 ATGGCGAAGGCAATCCCCTGGACCTGTA-CTGACGCTCATGCACGAAAGCGTGGGGAGCA 3074 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG 352 ||||||||||||||||||||||||||||||| ||||||||| ||| | ||| ||| Sbjct 3073 AACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGTTGGG 3017 >seq902 Length=1850 Score = 73.4 bits (80), Expect = 1e-10 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 ||||||||| |||||||||||||||||||||||| ||| | |||||||||||| Sbjct 55 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203178222080