Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq400 430 3e-118
seq365 347 3e-93
seq819 224 2e-56
seq583 179 9e-43
seq902 73.4 1e-10
>seq400
Length=5312
Score = 430 bits (476), Expect = 3e-118
Identities = 336/400 (84%), Gaps = 2/400 (1%)
Strand=Plus/Minus
Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68
|| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1776 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 1717
Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128
|||||||||||||||||||||| ||||||| || | ||||||||||||||||| |
Sbjct 1716 CTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTCAGAGGTGAAATCCC 1657
Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188
| |||||||||| || ||||| ||||| |||| | || |||| ||| || | |||
Sbjct 1656 AGGGCTCAACCCTGGAACTGCCTTTGATACTGGCGATCTTGAGTATGAGAGAGGTATGTG 1597
Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248
||| ||| ||||||| |||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 1596 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 1537
Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308
| | |||| | |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1536 ACATACTGGCTCATTACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 1477
Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368
||||||||||||||||||||||||||||| | |||| ||||||| |||| | | ||
Sbjct 1476 ACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGCTGCAT--GCAGTTCG 1419
Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||| |||||| |||||| |||| | ||| |||||||||||
Sbjct 1418 GTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTA 1379
>seq365
Length=5917
Score = 347 bits (384), Expect = 3e-93
Identities = 316/397 (80%), Gaps = 1/397 (0%)
Strand=Plus/Minus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 3351 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCG 3292
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||| ||||||||||| | |||||| || || | ||| | |||||| | ||
Sbjct 3291 GAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCTGCTGTGAAAACCCGAGG 3232
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
||||||| |||| |||| | | || | |||||||||| | ||||| | ||||||
Sbjct 3231 CTCAACCTCGGGCCTGCAGTGGGTACGGGCAAGCTAGAGTGCGGTAGGGGAGATTGGAAT 3172
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
|||| |||||||||||||||||| |||||| |||||||||||| |||||||||| | |
Sbjct 3171 TCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGATGGCGAAGGCAGATC 3112
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
|||| | ||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 3111 TCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAACAGGATTAGATACCC 3052
Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGC-GCATAAGTGCTCCGGTG 371
|||||||||| |||||||||| || ||||| ||| ||| | | | | | | |||
Sbjct 3051 TGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTTCCACGGTTTCTGTG 2992
Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|| ||| |||||| ||||| || |||||||||||
Sbjct 2991 TCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTA 2955
>seq819
Length=2095
Score = 224 bits (248), Expect = 2e-56
Identities = 261/351 (74%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60
||| ||| || ||| ||||||||| |||||||||||||||||||||||| ||| |
Sbjct 504 TACCTGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 563
Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120
||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||
Sbjct 564 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCCTATAAGTCAGTGGT 623
Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCA---GG 177
||||| | ||| ||| | | ||| ||||| |||| ||| || || | | |
Sbjct 624 GAAAGACGGCAGCTTAACTGTCGCAGTGCCTTTGATACTGTAGGACTTGAATCTATTTGA 683
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || | ||||| ||||||||||||||| ||||||| |||||||
Sbjct 684 AGTGG---GCGGAATAAGACAAGTAGCGGTGAAATGCATAGATATGTCTTAGAACACCGA 740
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
| |||||||| ||| || | | | |||| |||| || |||||||||||||| | ||
Sbjct 741 TTGCGAAGGCAGCTCACTAAGTTATTATTGACGCTGATGCACGAAAGCGTGGGGATCGAA 800
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348
||||||||||||||||||||||||||||| |||||||||| ||| | |||
Sbjct 801 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGT 851
Score = 132 bits (146), Expect = 1e-28
Identities = 119/147 (81%), Gaps = 12/147 (8%)
Strand=Plus/Plus
Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1174 TGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAGTCCACGC 1233
Query 326 CGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT--GCCGC--AGCAAA 381
| ||||||||||||||| | ||| | | ||| | | || || || ||| ||
Sbjct 1234 CCTAAACGATGAATACTCGCTGTTAGCG---ATA-----TACAGTTAGCGGCTAAGCGAA 1285
Query 382 CGCAATAAGTATTCCACCTGGGGAGTA 408
|| ||||||||||||||||||||||
Sbjct 1286 AGCGTTAAGTATTCCACCTGGGGAGTA 1312
Score = 116 bits (128), Expect = 9e-24
Identities = 82/94 (87%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302
||||| |||| || | | | |||| ||||||| |||||||||||||||| |||||||
Sbjct 952 AAGGCAGCTTACTATGGTCTTATTGACGCTGAGGCACGAAAGCGTGGGGAGCGAACAGGA 1011
Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336
||||||||||||||||||||||||||||||||||
Sbjct 1012 TTAGATACCCTGGTAGTCCACGCCGTAAACGATG 1045
>seq583
Length=3271
Score = 179 bits (198), Expect = 9e-43
Identities = 148/177 (84%), Gaps = 4/177 (2%)
Strand=Plus/Minus
Query 177 GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236
|||||| | ||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 3190 GAGGGGGA--TGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCG 3133
Query 237 GTGGCGAAGGCGGCTTGCTGGAC-TGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295
|||||||||| |||||| |||| ||||| || | || |||||||||||||||||
Sbjct 3132 ATGGCGAAGGCAATCCCCTGGACCTGTA-CTGACGCTCATGCACGAAAGCGTGGGGAGCA 3074
Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG 352
||||||||||||||||||||||||||||||| ||||||||| ||| | ||| |||
Sbjct 3073 AACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGTTGGG 3017
>seq902
Length=1850
Score = 73.4 bits (80), Expect = 1e-10
Identities = 49/55 (89%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73
||||||||| |||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 55 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCAAGCGTTATCCGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203178222080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |