Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq583 500 3e-139 seq555 390 4e-106 seq412 352 1e-94 seq365 251 2e-64 >seq583 Length=3271 Score = 500 bits (554), Expect = 3e-139 Identities = 404/483 (84%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 876 TCGAGTCCGAATAGGGCGACATAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCC 817 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 816 ATGGCCAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCCACTAATGTTGAAAA 757 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 756 ATTAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTC 697 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 696 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTAT 637 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297 |||||||||||||| ||||||||||||||||||||||||||||||| || | | | Sbjct 636 GGCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTG 577 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | || | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 576 TATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 519 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | ||||||| || ||| | || | || ||||| Sbjct 518 CACAGCTAAGGTCCCAAATTTTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACA 461 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 460 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 402 Query 478 GAG 480 ||| Sbjct 401 GAG 399 >seq555 Length=3447 Score = 390 bits (432), Expect = 4e-106 Identities = 418/542 (77%), Gaps = 18/542 (3%) Strand=Plus/Minus Query 32 GTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTG 91 |||||| ||||||| ||||||||||||||| |||| ||||| | |||||||| || Sbjct 2912 GTAGACGCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTTTGGGTAACACCAAATG 2853 Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||| ||||||| | | |||||||| | |||||| |||||||||||||||||||| Sbjct 2852 GAGGACCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGG 2793 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAG-T 210 | || |||||| |||||||||| || ||| |||||| |||||||| || || | | Sbjct 2792 CCAATCAAACTCGGAAATAGCTCGTACTCCCCGAAATGCATTTAGGTGCAGCGTCGTGAT 2733 Query 211 ATCACC-ATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACC 268 || || | |||||||| |||| | ||| | |||| | | |||||| | Sbjct 2732 ATAGTTTATTAGAGGTAGAGCTACTGAT-TGGATGCGGGGGAGTCAAATCCTACCAATTC 2674 Query 269 ATTGCAAACTCCGAATGCGCATCAGT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 | |||||||||||||| || | | ||||| || ||||||||||||||||||||| Sbjct 2673 CTGACAAACTCCGAATGCTAATAAATGATTTACGGC---AGTGAGGGCATGGGTGCTAAG 2617 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 |||| || |||||||| ||||| || ||| ||||||||||| ||| |||| ||||| Sbjct 2616 GTCCATGTCCGAGAGGGAAAGAACCCAGACCATCAGCTAAGGTCCCCAAATATATGCTAA 2557 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 ||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||| Sbjct 2556 GTTGAACTAACGCGGTTTGATTGCCCCGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 2497 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506 |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 2496 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGCGATCGGGCATGGATAATAATCGGGC 2437 Query 507 ATTAAGTTGTCTACCGAAGCAGTGG---GATCATTTAT--ATGAT---CGGTAGGGGAGC 558 | |||| ||||||||| ||| || |||| | || || ||||||||||| Sbjct 2436 A-TAAGCATATTACCGAAGCTATGGATTTATAATTTTTGAATTATATCTGGTAGGGGAGC 2378 Query 559 AT 560 || Sbjct 2377 AT 2376 >seq412 Length=5103 Score = 352 bits (390), Expect = 1e-94 Identities = 373/483 (77%), Gaps = 10/483 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||| || |||||||||||||| |||||||| ||| Sbjct 3054 CGAGTCTGATAAGGGCGCATAGTCGCGGGCAGTAGACCCGAAACCGGGTGATCTAGTCAT 2995 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||| |||||| | ||||||| |||||||||| ||||| |||| Sbjct 2994 GGCCAGGGTGAAGGTGCCGTAACAGGTACTGGAGGCCCGAACCCACGTCTGTTGCAAAAG 2935 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||||||| |||| |||||| ||||| | ||| ||| ||||||||||||| Sbjct 2934 ACGGGGATGAGCTGTGATTAGGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTC 2875 Query 181 TCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 ||||| |||||||||||| ||||| | ||||| | ||||||||||||||||||||| Sbjct 2874 CTCGAAAGCTATTTAGGTAGCGCCTCATATGTATC-CTCTCGGGGGTAGAGCACTGTTAT 2816 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297 |||||||||||||| ||||||||||||||||||||||||||||||| || | | | Sbjct 2815 GGCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTG 2756 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | || | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 2755 TATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 2698 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | ||||||| || ||| | || | || ||||| Sbjct 2697 CACAGCTAAGGTCCCAAATTTTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACA 2640 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 2639 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 2581 Query 478 GAG 480 ||| Sbjct 2580 GAG 2578 Score = 226 bits (250), Expect = 1e-56 Identities = 260/343 (76%), Gaps = 9/343 (3%) Strand=Plus/Minus Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 || |||||| ||||| | ||| ||| ||||||||||||| ||||| |||||||||||| Sbjct 2402 GGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAG 2343 Query 201 TGCCTCAA--GTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGAC 258 |||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2342 CGCCTCATATGTATCCTC-TCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATCGCGAC 2284 Query 259 TTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTTACCGCGGGAGTGAGGGCATG 317 |||||||||||||||||||||||||| || | | | | | || | ||| | Sbjct 2283 TTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTGTATGGGAGACACACGGC--G 2226 Query 318 GGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAAT 377 |||||||| |||||| | ||| || || || ||| ||||||||| ||| || | Sbjct 2225 GGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACCCACAGCTAAGGTCCCAAATT 2166 Query 378 GACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAA 437 ||||||| || ||| | || | || ||||||| |||| |||||||| ||| Sbjct 2165 TTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACAGCCAGGAGGTTGGCTTAGAA 2108 Query 438 GCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||||| | |||||||| |||||| |||||||| |||||| Sbjct 2107 GCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTCGAG 2066 >seq365 Length=5917 Score = 251 bits (278), Expect = 2e-64 Identities = 352/484 (73%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||||| | |||||||||| | |||||||||| ||| Sbjct 1113 CGAGTCTGAATAGGGCGATTCAGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCA 1054 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 1053 TGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 994 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 993 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 934 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 |||||||| |||||||| || | || | | ||| |||||||| |||| | Sbjct 933 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 875 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC-AAACTCCGAATGCGCATCAGTTT 296 |||| | || | | | | | | || || ||||||||||||| | ||| Sbjct 874 TGGC-CGATGGGCCCTACAAGGTTACTGACGTCAGCTAAACTCCGAATGCCGGTAAGTGA 816 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | ||| | |||||| |||| | |||| | | | ||||||| || || || || Sbjct 815 GAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCAGAT 756 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | || |||||| ||| || | ||||||| || || || || ||||| ||| Sbjct 755 CACCAACTAAGGTCCCAAAGCGCGTGCTAAGTGGAA--AAGGATGTGGAGTTGCTGTGAC 698 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| || Sbjct 697 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGT 639 Query 477 CGAG 480 | || Sbjct 638 CAAG 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689569418240