Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq583 500 3e-139
seq555 390 4e-106
seq412 352 1e-94
seq365 251 2e-64
>seq583
Length=3271
Score = 500 bits (554), Expect = 3e-139
Identities = 404/483 (84%), Gaps = 8/483 (2%)
Strand=Plus/Minus
Query 1 TCGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 876 TCGAGTCCGAATAGGGCGACATAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCC 817
Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 816 ATGGCCAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCCACTAATGTTGAAAA 757
Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 756 ATTAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTC 697
Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 696 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTAT 637
Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297
|||||||||||||| ||||||||||||||||||||||||||||||| || | | |
Sbjct 636 GGCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTG 577
Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| | || | ||| ||||||||| |||||| | ||| || || || |||
Sbjct 576 TATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 519
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | ||||||| || ||| | || | || |||||
Sbjct 518 CACAGCTAAGGTCCCAAATTTTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACA 461
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| |||| |||||||| |||||||||| | |||||||| |||||| |||||||| |||
Sbjct 460 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 402
Query 478 GAG 480
|||
Sbjct 401 GAG 399
>seq555
Length=3447
Score = 390 bits (432), Expect = 4e-106
Identities = 418/542 (77%), Gaps = 18/542 (3%)
Strand=Plus/Minus
Query 32 GTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTG 91
|||||| ||||||| ||||||||||||||| |||| ||||| | |||||||| ||
Sbjct 2912 GTAGACGCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTTTGGGTAACACCAAATG 2853
Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151
|||| ||||||| | | |||||||| | |||||| ||||||||||||||||||||
Sbjct 2852 GAGGACCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGG 2793
Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAG-T 210
| || |||||| |||||||||| || ||| |||||| |||||||| || || | |
Sbjct 2792 CCAATCAAACTCGGAAATAGCTCGTACTCCCCGAAATGCATTTAGGTGCAGCGTCGTGAT 2733
Query 211 ATCACC-ATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACC 268
|| || | |||||||| |||| | ||| | |||| | | |||||| |
Sbjct 2732 ATAGTTTATTAGAGGTAGAGCTACTGAT-TGGATGCGGGGGAGTCAAATCCTACCAATTC 2674
Query 269 ATTGCAAACTCCGAATGCGCATCAGT--TTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326
| |||||||||||||| || | | ||||| || |||||||||||||||||||||
Sbjct 2673 CTGACAAACTCCGAATGCTAATAAATGATTTACGGC---AGTGAGGGCATGGGTGCTAAG 2617
Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386
|||| || |||||||| ||||| || ||| ||||||||||| ||| |||| |||||
Sbjct 2616 GTCCATGTCCGAGAGGGAAAGAACCCAGACCATCAGCTAAGGTCCCCAAATATATGCTAA 2557
Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446
||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2556 GTTGAACTAACGCGGTTTGATTGCCCCGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 2497
Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2496 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGCGATCGGGCATGGATAATAATCGGGC 2437
Query 507 ATTAAGTTGTCTACCGAAGCAGTGG---GATCATTTAT--ATGAT---CGGTAGGGGAGC 558
| |||| ||||||||| ||| || |||| | || || |||||||||||
Sbjct 2436 A-TAAGCATATTACCGAAGCTATGGATTTATAATTTTTGAATTATATCTGGTAGGGGAGC 2378
Query 559 AT 560
||
Sbjct 2377 AT 2376
>seq412
Length=5103
Score = 352 bits (390), Expect = 1e-94
Identities = 373/483 (77%), Gaps = 10/483 (2%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| || |||||| | |||||| || |||||||||||||| |||||||| |||
Sbjct 3054 CGAGTCTGATAAGGGCGCATAGTCGCGGGCAGTAGACCCGAAACCGGGTGATCTAGTCAT 2995
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
||||||| ||||||||| |||||| | ||||||| |||||||||| ||||| ||||
Sbjct 2994 GGCCAGGGTGAAGGTGCCGTAACAGGTACTGGAGGCCCGAACCCACGTCTGTTGCAAAAG 2935
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
|||||||||||||| |||| |||||| ||||| | ||| ||| |||||||||||||
Sbjct 2934 ACGGGGATGAGCTGTGATTAGGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTC 2875
Query 181 TCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTAT 238
||||| |||||||||||| ||||| | ||||| | |||||||||||||||||||||
Sbjct 2874 CTCGAAAGCTATTTAGGTAGCGCCTCATATGTATC-CTCTCGGGGGTAGAGCACTGTTAT 2816
Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTT 297
|||||||||||||| ||||||||||||||||||||||||||||||| || | | |
Sbjct 2815 GGCTAGGGGGTCATCGCGACTTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTG 2756
Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| | || | ||| ||||||||| |||||| | ||| || || || |||
Sbjct 2755 TATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 2698
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||| ||| || | ||||||| || ||| | || | || |||||
Sbjct 2697 CACAGCTAAGGTCCCAAATTTTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACA 2640
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
|| |||| |||||||| |||||||||| | |||||||| |||||| |||||||| |||
Sbjct 2639 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 2581
Query 478 GAG 480
|||
Sbjct 2580 GAG 2578
Score = 226 bits (250), Expect = 1e-56
Identities = 260/343 (76%), Gaps = 9/343 (3%)
Strand=Plus/Minus
Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200
|| |||||| ||||| | ||| ||| ||||||||||||| ||||| ||||||||||||
Sbjct 2402 GGAGTGAAAAGCTAATCGAACCCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAG 2343
Query 201 TGCCTCAA--GTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGAC 258
|||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2342 CGCCTCATATGTATCCTC-TCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATCGCGAC 2284
Query 259 TTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTTACCGCGGGAGTGAGGGCATG 317
|||||||||||||||||||||||||| || | | | | | || | ||| |
Sbjct 2283 TTACCAAACCATTGCAAACTCCGAATACCGAGACGGACTGTATGGGAGACACACGGC--G 2226
Query 318 GGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAAT 377
|||||||| |||||| | ||| || || || ||| ||||||||| ||| || |
Sbjct 2225 GGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACCCACAGCTAAGGTCCCAAATT 2166
Query 378 GACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAA 437
||||||| || ||| | || | || ||||||| |||| |||||||| |||
Sbjct 2165 TTGTGCTAAGTGGAA--AACCATGTGGAAAGGCACAGACAGCCAGGAGGTTGGCTTAGAA 2108
Query 438 GCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||||||| | |||||||| |||||| |||||||| ||||||
Sbjct 2107 GCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTCGAG 2066
>seq365
Length=5917
Score = 251 bits (278), Expect = 2e-64
Identities = 352/484 (73%), Gaps = 10/484 (2%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
|||||| ||| ||||||| ||||||| | |||||||||| | |||||||||| |||
Sbjct 1113 CGAGTCTGAATAGGGCGATTCAGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCA 1054
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119
|||||||| ||||| |||||| ||| | |||||| ||||||||||| | ||||||||
Sbjct 1053 TGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 994
Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179
| |||||||||||||||| |||||||||||||| || ||||||| | ||||||||||||
Sbjct 993 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 934
Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237
|||||||| |||||||| || | || | | ||| |||||||| |||| |
Sbjct 933 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 875
Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC-AAACTCCGAATGCGCATCAGTTT 296
|||| | || | | | | | | || || ||||||||||||| | |||
Sbjct 874 TGGC-CGATGGGCCCTACAAGGTTACTGACGTCAGCTAAACTCCGAATGCCGGTAAGTGA 816
Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356
| ||| | |||||| |||| | |||| | | | ||||||| || || || ||
Sbjct 815 GAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCAGAT 756
Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416
| || |||||| ||| || | ||||||| || || || || ||||| |||
Sbjct 755 CACCAACTAAGGTCCCAAAGCGCGTGCTAAGTGGAA--AAGGATGTGGAGTTGCTGTGAC 698
Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476
| | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| ||
Sbjct 697 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGT 639
Query 477 CGAG 480
| ||
Sbjct 638 CAAG 635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689569418240
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