Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq583 235 1e-59 seq1299 233 4e-59 seq1201 217 3e-54 seq412 208 1e-51 seq1594 206 5e-51 seq1583 197 3e-48 seq365 143 5e-32 seq555 118 2e-24 >seq583 Length=3271 Score = 235 bits (260), Expect = 1e-59 Identities = 249/325 (77%), Gaps = 11/325 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| ||||| ||||||| Sbjct 1489 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATA 1430 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| ||||| Sbjct 1429 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACC 1370 Query 118 -GGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCA--AAGCGAACGCGGCGAAC 174 ||| | ||| | ||||||||||||||| ||| | |||||| || |||| Sbjct 1369 TGGCAAGTCAGGT--ATCTTTGCTGAATACATAGG---GCAAGAGGCGAACCAGGGGAAC 1315 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 1314 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 1255 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGG 294 |||| | ||| ||||||| | |||||| || || || |||||| Sbjct 1254 CGAATTCGGAAGAGCCTTGCAGTGATAGTCAGTGTGTTAACAAAACGGAATGGAAAGTCC 1195 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 ||||||| |||||||||||||||| Sbjct 1194 GGCCATAGTGGGTGATAGCCCCGTA 1170 >seq1299 Length=1159 Score = 233 bits (258), Expect = 4e-59 Identities = 216/269 (80%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||||||||||||||||| | |||||| ||| ||||| |||| ||||||| Sbjct 548 AGAGCATGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 607 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | |||||||||| ||||||| |||||||||||||| Sbjct 608 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCA-- 665 Query 121 CCTTTGGGTCA--TTGCATG--CTGAATACATAGGTATGCA--AAGCGAACGCGGCGAAC 174 ||| |||| | | || ||||||||||||| |||| | |||||| || |||| Sbjct 666 CCTGCAAGTCAGGTATCTTGTACTGAATACATAGG--TGCAAGAGGCGAACCAGGGGAAC 723 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 724 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 783 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGT 263 |||||| ||| ||||||| | |||||| Sbjct 784 CGAAATCGGAAGAGCCTTCTAGTGATAGT 812 >seq1201 Length=1307 Score = 217 bits (240), Expect = 3e-54 Identities = 188/231 (81%), Gaps = 14/231 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 226 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 167 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| Sbjct 166 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCAC- 108 Query 121 CCTTTGGGTCATTGCA-------TG-CTGAATACATAGGTATGCA-AAGCGAACGCGGCG 171 || || |||| || |||||||||||||| | |||||||| || | Sbjct 107 ----TGCAGCAATGCAGTATCCCTGACTGAATACATAGGTTAGTGGAAGCGAACCGGGTG 52 Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAA 222 ||||||||||||| ||||||| ||||||||||||||||||||||||| || Sbjct 51 AACTGAAACATCTCAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGAA 1 >seq412 Length=5103 Score = 208 bits (230), Expect = 1e-51 Identities = 244/325 (75%), Gaps = 15/325 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 3659 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 3600 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 3599 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 3541 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | |||||||| || ||||||| Sbjct 3540 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 3483 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 || ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||| Sbjct 3482 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGA 3423 Query 238 AATGGGATGAGCCTTTACGAGATAGTTGAATTG---ATAGTGGAATCCTCTGGAAATAGG 294 | ||| |||| ||| || ||| ||| ||| || ||||||||| || Sbjct 3422 ACGCGGACTAGCCCTTA------AGCTGATTTGGTTCTAGGAAAACGCTCTGGAAAGAGC 3369 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 ||||||| ||||||||||| ||| Sbjct 3368 GGCCATAGAAGGTGATAGCCCTGTA 3344 >seq1594 Length=749 Score = 206 bits (228), Expect = 5e-51 Identities = 242/322 (75%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| || |||||||| ||| | | |||||||||| ||||| || ||||| | Sbjct 411 AGGGCACACGGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGACGTGATAAGCTGCGAAA 352 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||||||||||| || ||| |||| |||||||||||| || |||||||| ||||| Sbjct 351 AGCTGCGGGGATTG-GCACACACGAAGTGATCCGCAGATATCTGAATGGGGCAACCCACT 293 Query 121 CCTTTGGGTCATTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178 | ||| || | | || |||||||||||| | |||||||| || |||||||| Sbjct 292 CGCTTGAGTAGTATCCTGTACTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGAA 233 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 | ||||||||| | ||||||||||||||||||||||||| |||||| | |||||||| Sbjct 232 ATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGAA 173 Query 239 ATGGGATGAGCCTTTACGAGATAGTTGAATTG-ATAGTGGAATCCTCTGGAAATAGGAGC 297 |||| |||||| ||||||||| | |||| ||| | ||| |||||| || Sbjct 172 CGCGGATCAGCCTTGACGAGATAG-CGTATTGAATAATCGAACGGAATGGAAAGTCCGGC 114 Query 298 CATAGCGGGTGATAGCCCCGTA 319 | |||| ||||||||||| ||| Sbjct 113 CGTAGCAGGTGATAGCCCTGTA 92 >seq1583 Length=772 Score = 197 bits (218), Expect = 3e-48 Identities = 242/324 (75%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 394 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 335 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 334 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 276 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | | || ||| || ||||||| Sbjct 275 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAGGCAAACCCGCTGAACTGA 218 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 ||||||||||||| | |||| |||||| ||| | |||||| |||||||||||||||| Sbjct 217 AACATCTAAGTAGGCGGAGGAGAAGAAAACAAAAGTGATTCCGTAAGTAGTGGCGAGCGA 158 Query 238 AATGGGATGAGCCTTTACGAGATAG--TTGAATTGATAGTGGAATCCTCTGGAAATAGGA 295 | ||| ||||||||||| ||| || | |||||| ||| |||||| Sbjct 157 ACGCGGAAGAGCCTTTACGTTTTAGCATTCA--GGATAGTCGAACGGAATGGAAAGTCCG 100 Query 296 GCCATAGCGGGTGATAGCCCCGTA 319 ||| |||| ||||||||||| ||| Sbjct 99 GCCGTAGCAGGTGATAGCCCTGTA 76 >seq365 Length=5917 Score = 143 bits (158), Expect = 5e-32 Identities = 193/265 (73%), Gaps = 14/265 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | || ||| ||||||||| ||| ||||||| Sbjct 1822 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTCGTAATCTGCGATA 1763 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 ||| |||||||| |||| ||| ||||||| ||||||||||||||||||||| Sbjct 1762 AGCCTCGGGGAGTTGATAAACGAACTGTGATCCGAGGATTTCCGAATGGGGAAACCCCGC 1703 Query 118 ---GGCCCTT---TG---GGTCATTGCATGCTGAATACATA-GGTATGCAAAGCGAACGC 167 ||| | | || ||| | | | ||||||| ||| || | | || ||||| Sbjct 1702 CAGGGCGCGTGCGTGCCTGGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACGT 1643 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAAC-CGAGATTCCCAAAGTA 226 || ||| |||||||||| |||| | |||||| ||||| |||| | |||||| |||| Sbjct 1642 GGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACATGTGATTCCGGGAGTA 1583 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||| ||| ||| || Sbjct 1582 GTGGCGAGCGAAACCGGAAGAGGCT 1558 >seq555 Length=3447 Score = 118 bits (130), Expect = 2e-24 Identities = 124/161 (77%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218 ||| ||| ||| ||||||||||||||||||| | | ||||||||||||| | ||||||| Sbjct 3395 AGCAAACCCGGAGAACTGAAACATCTAAGTACCCGGAGGAAAAGAAATCGA-AGAGATTC 3337 Query 219 CCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGA 278 | ||||||||||||||||| |||| |||| | | | || || || | || Sbjct 3336 CGTAAGTAGTGGCGAGCGAACGCGGATTAGCCCAAAAG---TCTTTATATATTTAATAGA 3280 Query 279 ATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 || |||||||| | |||||||| |||||||||||||||| Sbjct 3279 ATGTTCTGGAAAGAACAGCCATAGAGGGTGATAGCCCCGTA 3239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918383376960