Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq583 235 1e-59
seq1299 233 4e-59
seq1201 217 3e-54
seq412 208 1e-51
seq1594 206 5e-51
seq1583 197 3e-48
seq365 143 5e-32
seq555 118 2e-24
>seq583
Length=3271
Score = 235 bits (260), Expect = 1e-59
Identities = 249/325 (77%), Gaps = 11/325 (3%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | ||||||||||||||| | | |||||||||| ||||| ||||| |||||||
Sbjct 1489 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATA 1430
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117
|||| |||||||| ||||||| ||||||||||| |||| || |||||||| |||||
Sbjct 1429 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACC 1370
Query 118 -GGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCA--AAGCGAACGCGGCGAAC 174
||| | ||| | ||||||||||||||| ||| | |||||| || ||||
Sbjct 1369 TGGCAAGTCAGGT--ATCTTTGCTGAATACATAGG---GCAAGAGGCGAACCAGGGGAAC 1315
Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234
||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1314 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 1255
Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGG 294
|||| | ||| ||||||| | |||||| || || || ||||||
Sbjct 1254 CGAATTCGGAAGAGCCTTGCAGTGATAGTCAGTGTGTTAACAAAACGGAATGGAAAGTCC 1195
Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319
||||||| ||||||||||||||||
Sbjct 1194 GGCCATAGTGGGTGATAGCCCCGTA 1170
>seq1299
Length=1159
Score = 233 bits (258), Expect = 4e-59
Identities = 216/269 (80%), Gaps = 10/269 (4%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| ||||||||||||||||||| | |||||| ||| ||||| |||| |||||||
Sbjct 548 AGAGCATGTGGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATA 607
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||||||| ||||| | |||||||||| ||||||| ||||||||||||||
Sbjct 608 AGCTTCGGGGAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCA-- 665
Query 121 CCTTTGGGTCA--TTGCATG--CTGAATACATAGGTATGCA--AAGCGAACGCGGCGAAC 174
||| |||| | | || ||||||||||||| |||| | |||||| || ||||
Sbjct 666 CCTGCAAGTCAGGTATCTTGTACTGAATACATAGG--TGCAAGAGGCGAACCAGGGGAAC 723
Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234
||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 724 TGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAG 783
Query 235 CGAAATGGGATGAGCCTTTACGAGATAGT 263
|||||| ||| ||||||| | ||||||
Sbjct 784 CGAAATCGGAAGAGCCTTCTAGTGATAGT 812
>seq1201
Length=1307
Score = 217 bits (240), Expect = 3e-54
Identities = 188/231 (81%), Gaps = 14/231 (6%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 226 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 167
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||||||| ||||||| |||||||||| |||| |||||||||||||||||
Sbjct 166 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCAC- 108
Query 121 CCTTTGGGTCATTGCA-------TG-CTGAATACATAGGTATGCA-AAGCGAACGCGGCG 171
|| || |||| || |||||||||||||| | |||||||| || |
Sbjct 107 ----TGCAGCAATGCAGTATCCCTGACTGAATACATAGGTTAGTGGAAGCGAACCGGGTG 52
Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAA 222
||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 51 AACTGAAACATCTCAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCGAA 1
>seq412
Length=5103
Score = 208 bits (230), Expect = 1e-51
Identities = 244/325 (75%), Gaps = 15/325 (5%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| |
Sbjct 3659 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 3600
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|| ||||||| |||| || |||||||||| || ||||||||||||||||| |
Sbjct 3599 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 3541
Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177
| ||| || || | ||| ||||||||||| | |||||||| || |||||||
Sbjct 3540 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 3483
Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237
|| ||||||||| | ||||||||||||||||||||||||| |||||| | |||||||
Sbjct 3482 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGA 3423
Query 238 AATGGGATGAGCCTTTACGAGATAGTTGAATTG---ATAGTGGAATCCTCTGGAAATAGG 294
| ||| |||| ||| || ||| ||| ||| || ||||||||| ||
Sbjct 3422 ACGCGGACTAGCCCTTA------AGCTGATTTGGTTCTAGGAAAACGCTCTGGAAAGAGC 3369
Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319
||||||| ||||||||||| |||
Sbjct 3368 GGCCATAGAAGGTGATAGCCCTGTA 3344
>seq1594
Length=749
Score = 206 bits (228), Expect = 5e-51
Identities = 242/322 (75%), Gaps = 5/322 (2%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||||| || |||||||| ||| | | |||||||||| ||||| || ||||| |
Sbjct 411 AGGGCACACGGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGACGTGATAAGCTGCGAAA 352
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||||||||||| || ||| |||| |||||||||||| || |||||||| |||||
Sbjct 351 AGCTGCGGGGATTG-GCACACACGAAGTGATCCGCAGATATCTGAATGGGGCAACCCACT 293
Query 121 CCTTTGGGTCATTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178
| ||| || | | || |||||||||||| | |||||||| || ||||||||
Sbjct 292 CGCTTGAGTAGTATCCTGTACTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGAA 233
Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
| ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 232 ATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGAA 173
Query 239 ATGGGATGAGCCTTTACGAGATAGTTGAATTG-ATAGTGGAATCCTCTGGAAATAGGAGC 297
|||| |||||| ||||||||| | |||| ||| | ||| |||||| ||
Sbjct 172 CGCGGATCAGCCTTGACGAGATAG-CGTATTGAATAATCGAACGGAATGGAAAGTCCGGC 114
Query 298 CATAGCGGGTGATAGCCCCGTA 319
| |||| ||||||||||| |||
Sbjct 113 CGTAGCAGGTGATAGCCCTGTA 92
>seq1583
Length=772
Score = 197 bits (218), Expect = 3e-48
Identities = 242/324 (75%), Gaps = 10/324 (3%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| |
Sbjct 394 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 335
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|| ||||||| |||| || |||||||||| || ||||||||||||||||| |
Sbjct 334 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 276
Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177
| ||| || || | ||| ||||||||||| | | || ||| || |||||||
Sbjct 275 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAGGCAAACCCGCTGAACTGA 218
Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237
||||||||||||| | |||| |||||| ||| | |||||| ||||||||||||||||
Sbjct 217 AACATCTAAGTAGGCGGAGGAGAAGAAAACAAAAGTGATTCCGTAAGTAGTGGCGAGCGA 158
Query 238 AATGGGATGAGCCTTTACGAGATAG--TTGAATTGATAGTGGAATCCTCTGGAAATAGGA 295
| ||| ||||||||||| ||| || | |||||| ||| ||||||
Sbjct 157 ACGCGGAAGAGCCTTTACGTTTTAGCATTCA--GGATAGTCGAACGGAATGGAAAGTCCG 100
Query 296 GCCATAGCGGGTGATAGCCCCGTA 319
||| |||| ||||||||||| |||
Sbjct 99 GCCGTAGCAGGTGATAGCCCTGTA 76
>seq365
Length=5917
Score = 143 bits (158), Expect = 5e-32
Identities = 193/265 (73%), Gaps = 14/265 (5%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | ||||||||||||||| | || ||| ||||||||| ||| |||||||
Sbjct 1822 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTCGTAATCTGCGATA 1763
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117
||| |||||||| |||| ||| ||||||| |||||||||||||||||||||
Sbjct 1762 AGCCTCGGGGAGTTGATAAACGAACTGTGATCCGAGGATTTCCGAATGGGGAAACCCCGC 1703
Query 118 ---GGCCCTT---TG---GGTCATTGCATGCTGAATACATA-GGTATGCAAAGCGAACGC 167
||| | | || ||| | | | ||||||| ||| || | | || |||||
Sbjct 1702 CAGGGCGCGTGCGTGCCTGGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACGT 1643
Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAAC-CGAGATTCCCAAAGTA 226
|| ||| |||||||||| |||| | |||||| ||||| |||| | |||||| ||||
Sbjct 1642 GGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACATGTGATTCCGGGAGTA 1583
Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251
||||||||||||| ||| ||| ||
Sbjct 1582 GTGGCGAGCGAAACCGGAAGAGGCT 1558
>seq555
Length=3447
Score = 118 bits (130), Expect = 2e-24
Identities = 124/161 (77%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218
||| ||| ||| ||||||||||||||||||| | | ||||||||||||| | |||||||
Sbjct 3395 AGCAAACCCGGAGAACTGAAACATCTAAGTACCCGGAGGAAAAGAAATCGA-AGAGATTC 3337
Query 219 CCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGA 278
| ||||||||||||||||| |||| |||| | | | || || || | ||
Sbjct 3336 CGTAAGTAGTGGCGAGCGAACGCGGATTAGCCCAAAAG---TCTTTATATATTTAATAGA 3280
Query 279 ATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319
|| |||||||| | |||||||| ||||||||||||||||
Sbjct 3279 ATGTTCTGGAAAGAACAGCCATAGAGGGTGATAGCCCCGTA 3239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918383376960
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