Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq196 383 5e-104
seq194 329 1e-87
seq330 122 3e-25
>seq196
Length=13323
Score = 383 bits (424), Expect = 5e-104
Identities = 402/524 (77%), Gaps = 11/524 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| |||||| ||| ||||||| ||| |||||| ||||||||||||| |||||
Sbjct 12267 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGTCTGCCTTAGGACACCTACGTTACA 12326
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| | |||||| ||||||||| |||||||||| || |||| |||| || ||||
Sbjct 12327 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCATTGACGTGGATT 12386
Query 127 GGCC----CGCGAAGG---ACCTTAACGCCAGAAAATGGTCGGTGA-AGACCAGTTCCGC 178
| ||||| | |||| | ||||| || | | | | |||||||
Sbjct 12387 ATTAATATCTCGAAGATATAATTTAATACAAGAAA-TGTTATAAAATATAACAGTTCCAT 12445
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGG 236
|| || | |||||||| | ||||| |||||||||||||| || |||
Sbjct 12446 TTAATCAACTAAGTAAAGCATCGATATAAGTAGTGGTATTTCAAGATCGTAATAAAATTA 12505
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||| ||||||||||||| | | || ||||||| | | ||||||||||||||||
Sbjct 12506 CTCCCACCTATTCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAA 12565
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 12566 CAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGA 12625
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|| ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 12626 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 12685
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 12686 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCA 12745
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
| |||| | | ||||||| |||||||||||||||||
Sbjct 12746 ATTGGTTTCCCAATGATAACATTCATTGCACTGGGCAGAAATCA 12789
>seq194
Length=13415
Score = 329 bits (364), Expect = 1e-87
Identities = 345/449 (77%), Gaps = 11/449 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||| |||||| ||| ||||||| ||| |||||| ||||||||||||| |||||
Sbjct 820 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGTCTGCCTTAGGACACCTACGTTACA 879
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| | |||||| ||||||||| |||||||||| || |||| |||| || ||||
Sbjct 880 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCATTGACGTGGATT 939
Query 127 GGCC----CGCGAAGG---ACCTTAACGCCAGAAAATGGTCGGTGA-AGACCAGTTCCGC 178
| ||||| | |||| | ||||| || | | | | |||||||
Sbjct 940 ATTAATATCTCGAAGATATAATTTAATACAAGAAA-TGTTATAAAATATAACAGTTCCAT 998
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGG 236
|| || | |||||||| | ||||| |||||||||||||| || |||
Sbjct 999 TTAATCAACTAAGTAAAGCATCGATATAAGTAGTGGTATTTCAAGATCGTAATAAAATTA 1058
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||| ||||||||||||| | | || ||||||| | | ||||||||||||||||
Sbjct 1059 CTCCCACCTATTCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAA 1118
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1119 CAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGA 1178
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|| ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 1179 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 1238
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTC 445
|||||||||||||||||||||||||||||
Sbjct 1239 ACGAGGCATTTGGCTACCTTAAGAGAGTC 1267
Score = 80.6 bits (88), Expect = 9e-13
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491
||||||||||||||||||||||||||||||||||| | |||| | |||| |
Sbjct 7734 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATTGGTTTCCCAATG 7793
Query 492 TTGACATTCAGAGCACTGGGCAGAAATCA 520
| ||||||| |||||||||||||||||
Sbjct 7794 ATAACATTCATTGCACTGGGCAGAAATCA 7822
>seq330
Length=6704
Score = 122 bits (134), Expect = 3e-25
Identities = 81/90 (90%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|| ||||||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 2 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 61
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCA 446
||||||||||||||||||||||||||||||
Sbjct 62 ACGAGGCATTTGGCTACCTTAAGAGAGTCA 91
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635170402880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |