Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq196 383 5e-104 seq194 329 1e-87 seq330 122 3e-25 >seq196 Length=13323 Score = 383 bits (424), Expect = 5e-104 Identities = 402/524 (77%), Gaps = 11/524 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||||| ||||||||||||| ||||| Sbjct 12267 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGTCTGCCTTAGGACACCTACGTTACA 12326 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | |||||| ||||||||| |||||||||| || |||| |||| || |||| Sbjct 12327 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCATTGACGTGGATT 12386 Query 127 GGCC----CGCGAAGG---ACCTTAACGCCAGAAAATGGTCGGTGA-AGACCAGTTCCGC 178 | ||||| | |||| | ||||| || | | | | ||||||| Sbjct 12387 ATTAATATCTCGAAGATATAATTTAATACAAGAAA-TGTTATAAAATATAACAGTTCCAT 12445 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGG 236 || || | |||||||| | ||||| |||||||||||||| || ||| Sbjct 12446 TTAATCAACTAAGTAAAGCATCGATATAAGTAGTGGTATTTCAAGATCGTAATAAAATTA 12505 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||||||||||||| | | || ||||||| | | |||||||||||||||| Sbjct 12506 CTCCCACCTATTCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAA 12565 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 12566 CAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGA 12625 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||||||||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 12626 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 12685 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 12686 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCA 12745 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | |||| | | ||||||| ||||||||||||||||| Sbjct 12746 ATTGGTTTCCCAATGATAACATTCATTGCACTGGGCAGAAATCA 12789 >seq194 Length=13415 Score = 329 bits (364), Expect = 1e-87 Identities = 345/449 (77%), Gaps = 11/449 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||||| ||||||||||||| ||||| Sbjct 820 CTTTTACTCTACGAGAGGTTTCTGTCCTCTCTGAGTCTGCCTTAGGACACCTACGTTACA 879 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | |||||| ||||||||| |||||||||| || |||| |||| || |||| Sbjct 880 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCATTGACGTGGATT 939 Query 127 GGCC----CGCGAAGG---ACCTTAACGCCAGAAAATGGTCGGTGA-AGACCAGTTCCGC 178 | ||||| | |||| | ||||| || | | | | ||||||| Sbjct 940 ATTAATATCTCGAAGATATAATTTAATACAAGAAA-TGTTATAAAATATAACAGTTCCAT 998 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGG 236 || || | |||||||| | ||||| |||||||||||||| || ||| Sbjct 999 TTAATCAACTAAGTAAAGCATCGATATAAGTAGTGGTATTTCAAGATCGTAATAAAATTA 1058 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||||||||||||| | | || ||||||| | | |||||||||||||||| Sbjct 1059 CTCCCACCTATTCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAA 1118 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 1119 CAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGA 1178 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||||||||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 1179 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 1238 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTC 445 ||||||||||||||||||||||||||||| Sbjct 1239 ACGAGGCATTTGGCTACCTTAAGAGAGTC 1267 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 ||||||||||||||||||||||||||||||||||| | |||| | |||| | Sbjct 7734 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATTGGTTTCCCAATG 7793 Query 492 TTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||||| ||||||||||||||||| Sbjct 7794 ATAACATTCATTGCACTGGGCAGAAATCA 7822 >seq330 Length=6704 Score = 122 bits (134), Expect = 3e-25 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||||||||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 2 ATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCG 61 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 |||||||||||||||||||||||||||||| Sbjct 62 ACGAGGCATTTGGCTACCTTAAGAGAGTCA 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635170402880