Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq555 401 2e-109
seq412 358 2e-96
seq1688 302 2e-79
seq1374 183 1e-43
seq370 102 3e-19
seq196 102 3e-19
>seq555
Length=3447
Score = 401 bits (444), Expect = 2e-109
Identities = 434/569 (76%), Gaps = 31/569 (5%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| ||||| ||||||||| ||||| ||| || ||||| | | | || ||
Sbjct 1314 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACTCTACGCACGGTTACC 1373
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | ||||||||||||||| | ||||||||||| ||| ||||| | ||| ||||||
Sbjct 1374 AAGCGTGCTGAGGGAACCTTTAGAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCCAG 1432
Query 121 TTAAACTACCCACCAGGCACTGTCC--CCAACCCAGATCATGGGCCAAGGTTAGATATCC 178
| ||||||||||||| ||| ||||| | || | | | | |||||
Sbjct 1433 TCAAACTACCCACCACGCAATGTCCTTCTAAAAGAAGTTAGGCTCCAAG----------- 1481
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
|| | || ||||||||||||||| |||||||||| |||||||||| | || ||| |
Sbjct 1482 --TAAGTAAAGGGTGGTATTTCAACAATGACTCCACAAACACTAGCGTGCCTGCTTCACA 1539
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
||||||||||||||||||||| | || || | |||||| |||||||||| |||||
Sbjct 1540 GTCTCCCACCTATCCTACACATCACTTACTCAAAGACAATACTAAGCTATAGTAAAGGTG 1599
Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| | |||||||||||||| | ||| | || ||||||| || |||| |||||||||
Sbjct 1600 CACAGGGTCTTTTCGTCCCACTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCAC 1659
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416
|| || ||| |||||||| | || ||||||| |||||||||||||||||||||||
Sbjct 1660 CGAGCTCATGGCTGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTA 1718
Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1719 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 1778
Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCT--CTTAACCTTCCAG 534
|||| | | ||| || || || |||| || | ||| |||||||||||||
Sbjct 1779 TTCAGTCAAACGCTTCGCA------TTG--CTGCTAAC--GCCCTTCCTTAACCTTCCAG 1828
Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTC 563
||||||||||| ||||| || ||||| ||
Sbjct 1829 CACCGGGCAGGTGTCAGGCCCTATACTTC 1857
>seq412
Length=5103
Score = 358 bits (396), Expect = 2e-96
Identities = 417/554 (75%), Gaps = 14/554 (3%)
Strand=Plus/Plus
Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72
||| |||||||||| | ||| ||| || ||| || | ||| || ||| ||||||
Sbjct 829 TCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTCCGACCGCGCTGAG 888
Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132
| ||||| | || |||||||||| ||| ||||| | ||||||||||| ||||||||||
Sbjct 889 CGTACCTTCGAGCTCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCAGTCAAACTACCCA 947
Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCACTACGGTCAGAG 191
||| ||| |||| |||| ||| ||||||| |||||||| || | ||| ||| |
Sbjct 948 CCATACACGGTCCTGGACCCGGATAATGGGCCCAGGTTAGAACGTCAAGCACGA-CAGGG 1006
Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251
||||||||||| | | |||||| | |||||| | | |||||| |||||||||||
Sbjct 1007 TGGTATTTCAAGGATGGCTCCACTGCAGCTAGCGCCACAGTTTCATAGCCTCCCACCTAT 1066
Query 252 CCTACACAAACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309
|||||||| || | || || | || | |||||||||| ||||| | ||||||||||
Sbjct 1067 CCTACACAGAC-GAACTCAACGTTCAGTGTAAAGCTATAGTAAAGGTTCACGGGGTCTTT 1125
Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369
|||| |||| || ||| ||||||| || | | ||||||||| | | || |||
Sbjct 1126 CCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT 1185
Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 1245
Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489
||||||||||||||| ||||||||||| |||||||||||||||||||| || | ||
Sbjct 1246 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGC 1305
Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549
|| | | || ||| || | |||||||||||||||||||||||||||
Sbjct 1306 TTCGC------CTTG--CGGCTGACCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTC 1357
Query 550 AGTCCGTATACCTC 563
| || ||||| ||
Sbjct 1358 ACACCCTATACGTC 1371
>seq1688
Length=639
Score = 302 bits (334), Expect = 2e-79
Identities = 355/476 (75%), Gaps = 23/476 (5%)
Strand=Plus/Plus
Query 90 CCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAA 149
||||||| ||||||||| | |||||||||| ||||| || |||| ||||||||||| |
Sbjct 2 CCGTTACGCTTTGGGAGGAGA-CCGCCCCAGTCAAACTGCCTACCATGCACTGTCCCCGA 60
Query 150 CCCAGATCATGGGCCAAGGTTAGATA-TCCACTACGGTCAGAGTGGTATTTCAACAACGA 208
|||||| |||| ||||||||||| || | || ||| ||||||||||||| |
Sbjct 61 TCCAGATAATGGACCAAGGTTAGAACCTCAAACACAC-CAGGGTGGTATTTCAACGTTGG 119
Query 209 CTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACC 268
||||| | |||||||| | | ||| || ||||||||||||||||||| | | |
Sbjct 120 CTCCATGAGAACTAGCGTCCTCACTTCAAAGCCTCCCACCTATCCTACACAGATCTGTTC 179
Query 269 GAATGCCAATACCAAGCTATAGTGAAGGTCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAA 327
|| ||||||| |||||| ||| ||||| | ||||||||| |||| | ||||| | |
Sbjct 180 AAAATCCAATACAAAGCTACAGTAAAGGTTCATGGGGTCTTTCCGTCTTTCCGCGGGGAG 239
Query 328 CGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTC 387
||||| | || | | ||| ||| | | | || || ||||||| || ||
Sbjct 240 ATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATC 299
Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 359
Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTG 507
|||||||||| ||||||||||||||||||||||| | | || ||| |||
Sbjct 360 TTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAG-CTTGCACCCCA------- 411
Query 508 TGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563
||| |||| ||||||||||||||||||||||| || ||||| ||
Sbjct 412 ---TCA--------TTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTC 456
>seq1374
Length=1034
Score = 183 bits (202), Expect = 1e-43
Identities = 291/408 (71%), Gaps = 17/408 (4%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCT--GATTG 58
||||||||| |||| ||||||| || ||| ||| || ||||| ||| | | ||
Sbjct 395 TCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTC--CACGTACGGTTA 338
Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118
|||| | ||||| ||||||| ||||||||||| |||| ||||| | ||| ||||
Sbjct 337 CCAAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTACCTTTTTGGAGG-CGACCACCCC 279
Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178
||| ||||||||||||| || ||||| | | || | || || ||||| | |
Sbjct 278 AGTCAAACTACCCACCAAACAATGTCCTCGGC----ATAA----CCGAG-TTAGAAACCG 228
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| ||| | || | |||||||||| || |||| || || ||| ||| | |||
Sbjct 227 AATACAGAAAGGGCGGTATTTCAAGGTTGATTCCATGACTCCTGGCGAAGCCACTTCAAC 168
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT- 297
|||||| ||||||||||||| | | ||| ||| |||| ||||||||||||||||
Sbjct 167 ATCTCCCGCCTATCCTACACATCCTGTACCCAATTTCAATGTTAAGCTATAGTGAAGGTG 108
Query 298 CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| ||||||||| ||||| | ||| | ||| || |||| || ||| |||||||||
Sbjct 107 CATGGGGTCTTTCCGTCCCGTTGCGGGTAACCGGCGTCTTCACCGATACCACAATTTCAC 48
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCA 404
|| || ||| ||||||||| | || ||||||| |||||||||||
Sbjct 47 CGAGCTCATGGCTGAGACAGC-GCCCAGATCGTTACACCATTCGTGCA 1
>seq370
Length=5836
Score = 102 bits (112), Expect = 3e-19
Identities = 113/147 (77%), Gaps = 3/147 (2%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||||||| ||||| ||||||| || ||| ||| || ||||| || | | |||| |
Sbjct 172 TCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAAC-GATTTC 114
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| ||| ||||| ||| | | ||||||||||||| ||| ||| ||| |||||||||
Sbjct 113 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTAGGA-GGCGACCGCCCCA 55
Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146
|| ||||||||||||| | |||||||
Sbjct 54 GTCAAACTACCCACCATACGCTGTCCC 28
>seq196
Length=13323
Score = 102 bits (112), Expect = 3e-19
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432
||||| ||| |||||| |||||||||| ||||||| ||||||||| ||| ||||
Sbjct 12638 GACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTG 12697
Query 433 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
||||||||| || || |||||||| ||||||||||| | |||||||||
Sbjct 12698 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATT 12748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702369186560
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