Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq555 401 2e-109 seq412 358 2e-96 seq1688 302 2e-79 seq1374 183 1e-43 seq370 102 3e-19 seq196 102 3e-19 >seq555 Length=3447 Score = 401 bits (444), Expect = 2e-109 Identities = 434/569 (76%), Gaps = 31/569 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||| ||||||||| ||||| ||| || ||||| | | | || || Sbjct 1314 TCGACTTGTTGGTCTCACAGTCAAGCACCCTTATGCCATTGCACTCTACGCACGGTTACC 1373 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | ||||||||||||||| | ||||||||||| ||| ||||| | ||| |||||| Sbjct 1374 AAGCGTGCTGAGGGAACCTTTAGAAGCCTCCGTTACTCTTTTGGAGG-CGACCACCCCAG 1432 Query 121 TTAAACTACCCACCAGGCACTGTCC--CCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 | ||||||||||||| ||| ||||| | || | | | | ||||| Sbjct 1433 TCAAACTACCCACCACGCAATGTCCTTCTAAAAGAAGTTAGGCTCCAAG----------- 1481 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || | || ||||||||||||||| |||||||||| |||||||||| | || ||| | Sbjct 1482 --TAAGTAAAGGGTGGTATTTCAACAATGACTCCACAAACACTAGCGTGCCTGCTTCACA 1539 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 ||||||||||||||||||||| | || || | |||||| |||||||||| ||||| Sbjct 1540 GTCTCCCACCTATCCTACACATCACTTACTCAAAGACAATACTAAGCTATAGTAAAGGTG 1599 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | | |||||||||||||| | ||| | || ||||||| || |||| ||||||||| Sbjct 1600 CACAGGGTCTTTTCGTCCCACTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCAC 1659 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || || ||| |||||||| | || ||||||| ||||||||||||||||||||||| Sbjct 1660 CGAGCTCATGGCTGAGACAGT-GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTA 1718 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1719 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGC 1778 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCT--CTTAACCTTCCAG 534 |||| | | ||| || || || |||| || | ||| ||||||||||||| Sbjct 1779 TTCAGTCAAACGCTTCGCA------TTG--CTGCTAAC--GCCCTTCCTTAACCTTCCAG 1828 Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| ||||| || ||||| || Sbjct 1829 CACCGGGCAGGTGTCAGGCCCTATACTTC 1857 >seq412 Length=5103 Score = 358 bits (396), Expect = 2e-96 Identities = 417/554 (75%), Gaps = 14/554 (3%) Strand=Plus/Plus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||| |||||||||| | ||| ||| || ||| || | ||| || ||| |||||| Sbjct 829 TCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTCCGACCGCGCTGAG 888 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 | ||||| | || |||||||||| ||| ||||| | ||||||||||| |||||||||| Sbjct 889 CGTACCTTCGAGCTCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCAGTCAAACTACCCA 947 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCACTACGGTCAGAG 191 ||| ||| |||| |||| ||| ||||||| |||||||| || | ||| ||| | Sbjct 948 CCATACACGGTCCTGGACCCGGATAATGGGCCCAGGTTAGAACGTCAAGCACGA-CAGGG 1006 Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251 ||||||||||| | | |||||| | |||||| | | |||||| ||||||||||| Sbjct 1007 TGGTATTTCAAGGATGGCTCCACTGCAGCTAGCGCCACAGTTTCATAGCCTCCCACCTAT 1066 Query 252 CCTACACAAACCGCACCGAATGC-CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 |||||||| || | || || | || | |||||||||| ||||| | |||||||||| Sbjct 1067 CCTACACAGAC-GAACTCAACGTTCAGTGTAAAGCTATAGTAAAGGTTCACGGGGTCTTT 1125 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| || ||| ||||||| || | | ||||||||| | | || ||| Sbjct 1126 CCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT 1185 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1186 GGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 1245 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| ||||||||||| |||||||||||||||||||| || | || Sbjct 1246 TTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGC 1305 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 || | | || ||| || | ||||||||||||||||||||||||||| Sbjct 1306 TTCGC------CTTG--CGGCTGACCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTC 1357 Query 550 AGTCCGTATACCTC 563 | || ||||| || Sbjct 1358 ACACCCTATACGTC 1371 >seq1688 Length=639 Score = 302 bits (334), Expect = 2e-79 Identities = 355/476 (75%), Gaps = 23/476 (5%) Strand=Plus/Plus Query 90 CCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAA 149 ||||||| ||||||||| | |||||||||| ||||| || |||| ||||||||||| | Sbjct 2 CCGTTACGCTTTGGGAGGAGA-CCGCCCCAGTCAAACTGCCTACCATGCACTGTCCCCGA 60 Query 150 CCCAGATCATGGGCCAAGGTTAGATA-TCCACTACGGTCAGAGTGGTATTTCAACAACGA 208 |||||| |||| ||||||||||| || | || ||| ||||||||||||| | Sbjct 61 TCCAGATAATGGACCAAGGTTAGAACCTCAAACACAC-CAGGGTGGTATTTCAACGTTGG 119 Query 209 CTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACC 268 ||||| | |||||||| | | ||| || ||||||||||||||||||| | | | Sbjct 120 CTCCATGAGAACTAGCGTCCTCACTTCAAAGCCTCCCACCTATCCTACACAGATCTGTTC 179 Query 269 GAATGCCAATACCAAGCTATAGTGAAGGTCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAA 327 || ||||||| |||||| ||| ||||| | ||||||||| |||| | ||||| | | Sbjct 180 AAAATCCAATACAAAGCTACAGTAAAGGTTCATGGGGTCTTTCCGTCTTTCCGCGGGGAG 239 Query 328 CGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTC 387 ||||| | || | | ||| ||| | | | || || ||||||| || || Sbjct 240 ATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATC 299 Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 359 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTG 507 |||||||||| ||||||||||||||||||||||| | | || ||| ||| Sbjct 360 TTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAG-CTTGCACCCCA------- 411 Query 508 TGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||| |||| ||||||||||||||||||||||| || ||||| || Sbjct 412 ---TCA--------TTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTC 456 >seq1374 Length=1034 Score = 183 bits (202), Expect = 1e-43 Identities = 291/408 (71%), Gaps = 17/408 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCT--GATTG 58 ||||||||| |||| ||||||| || ||| ||| || ||||| ||| | | || Sbjct 395 TCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTC--CACGTACGGTTA 338 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 |||| | ||||| ||||||| ||||||||||| |||| ||||| | ||| |||| Sbjct 337 CCAAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTACCTTTTTGGAGG-CGACCACCCC 279 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCC 178 ||| ||||||||||||| || ||||| | | || | || || ||||| | | Sbjct 278 AGTCAAACTACCCACCAAACAATGTCCTCGGC----ATAA----CCGAG-TTAGAAACCG 228 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| | || | |||||||||| || |||| || || ||| ||| | ||| Sbjct 227 AATACAGAAAGGGCGGTATTTCAAGGTTGATTCCATGACTCCTGGCGAAGCCACTTCAAC 168 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT- 297 |||||| ||||||||||||| | | ||| ||| |||| |||||||||||||||| Sbjct 167 ATCTCCCGCCTATCCTACACATCCTGTACCCAATTTCAATGTTAAGCTATAGTGAAGGTG 108 Query 298 CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | ||||||||| ||||| | ||| | ||| || |||| || ||| ||||||||| Sbjct 107 CATGGGGTCTTTCCGTCCCGTTGCGGGTAACCGGCGTCTTCACCGATACCACAATTTCAC 48 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCA 404 || || ||| ||||||||| | || ||||||| ||||||||||| Sbjct 47 CGAGCTCATGGCTGAGACAGC-GCCCAGATCGTTACACCATTCGTGCA 1 >seq370 Length=5836 Score = 102 bits (112), Expect = 3e-19 Identities = 113/147 (77%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||| ||||||| || ||| ||| || ||||| || | | |||| | Sbjct 172 TCGACTTGTCAGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAAC-GATTTC 114 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | ||||||||||||| ||| ||| ||| ||||||||| Sbjct 113 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTAGGA-GGCGACCGCCCCA 55 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 || ||||||||||||| | ||||||| Sbjct 54 GTCAAACTACCCACCATACGCTGTCCC 28 >seq196 Length=13323 Score = 102 bits (112), Expect = 3e-19 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 373 GACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 432 ||||| ||| |||||| |||||||||| ||||||| ||||||||| ||| |||| Sbjct 12638 GACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTG 12697 Query 433 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||| || || |||||||| ||||||||||| | ||||||||| Sbjct 12698 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATT 12748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702369186560