Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq1775 297 4e-78
seq902 286 7e-75
seq819 271 2e-70
seq365 168 1e-39
seq400 165 2e-38
seq129 134 3e-29
seq1215 105 1e-20
seq1666 86.0 1e-14
>seq1775
Length=549
Score = 297 bits (328), Expect = 4e-78
Identities = 286/361 (79%), Gaps = 6/361 (2%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCT--CCCACAC 58
||||||||||||||||||||||| ||||||||| || |||| | || ||| | | |||
Sbjct 527 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTATAGTACCTTCA-GCTTACTCTCAC 469
Query 59 GTG-GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117
| | | |||||| |||| || ||||| |||||||| || |||| | ||||||| ||
Sbjct 468 GAGAGTAGGTTTC-TTCCTGTACAAAAGCAGTTTACACACCATAGATGCGTCATCCTGCA 410
Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177
||| | |||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 409 CGCGGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCG 350
Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237
||||||| ||| |||||||||||| ||| ||||||||| || |||||||| ||||||| |
Sbjct 349 TAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACC 290
Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGT 297
|||| | | || ||| ||||||||| || |||| ||||||| |||||| | |||| |
Sbjct 289 CATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTT 230
Query 298 ACACCGATGAATCTTTAATGA-TGATACCATGCAATCTCATCATACCATCAGGTATTAAT 356
| ||| || |||||||||| | | | | |||| | ||| || || ||||||||||
Sbjct 229 ATACCAATTAATCTTTAATAATTAAAAAGATGCCTTTTCAATTAACTATAAGGTATTAAT 170
Query 357 C 357
|
Sbjct 169 C 169
>seq902
Length=1850
Score = 286 bits (316), Expect = 7e-75
Identities = 251/313 (80%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||||| ||||||| | ||||||| || | ||||||
Sbjct 33 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTATTACACGT 92
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| | ||||||||| ||||||| ||||||||| || || || || |||| |||||
Sbjct 93 AATAAGGTTTATTCCCGAATAAAAGCAGTTTACAACCCAGAGGGCCGTCTTCCTGCACGC 152
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| ||||||||||||| | | ||||||||||||||||||| |||||||||||||||||
Sbjct 153 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 212
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||||||| |||||||||| |||||| |||
Sbjct 213 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAGACAT 272
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300
||| | || |||| |||||||||||||| |||| |||||| |||| |||||| ||
Sbjct 273 CGTCGCCTTGGTGAGCCGTTACCCCGCCAACTAGCTAATGTCACGCGAGCCCATCTTAAT 332
Query 301 CCGATGAATCTTT 313
|| || ||| |||
Sbjct 333 CCTATAAATATTT 345
>seq819
Length=2095
Score = 271 bits (300), Expect = 2e-70
Identities = 237/295 (80%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||||| ||||||| | |||||||| || | ||||||||
Sbjct 544 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTCAGGTACATTCAGCTTTCCACACGT 485
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|||| | |||||||||| | ||||| ||||||||| || ||| | ||||||| |||||
Sbjct 484 GGAAAGGTTTATTCCCTGACAAAAGCAGTTTACAACCCATAGGGCAGTCATCCTGCACGC 425
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| |||||||||||| | | |||||||||||||||||| |||||||||||||||||
Sbjct 424 GGCATGGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 365
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||||||| | |||||||| |||||| ||
Sbjct 364 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAAGAT 305
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295
| | || ||| ||||||||||| || |||| ||||| ||| | ||||||
Sbjct 304 CACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATCTTGCGCGTGCCCATC 250
>seq365
Length=5917
Score = 168 bits (186), Expect = 1e-39
Identities = 224/313 (72%), Gaps = 15/313 (5%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||| ||||||||| ||||| ||| |||||| || || |
Sbjct 3323 GGCTGCTGGCACGTAGTTAGCCGGTGCTTTTTCTGCAGGTACCGTCACTTTCGC------ 3376
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|| |||||| ||||||| |||||||| ||| || || |||||| ||||||
Sbjct 3377 --------TTCTTCCCTACTAAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGC 3427
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | |||| |||| || || |||||| ||||||||| ||||||||||||||||||
Sbjct 3428 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 3487
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || |
Sbjct 3488 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 3547
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300
||| | || |||| ||| ||||| | || || | || || | ||| ||||| |
Sbjct 3548 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCCGAA 3607
Query 301 CCGATGAATCTTT 313
||||| |||||||
Sbjct 3608 CCGATAAATCTTT 3620
>seq400
Length=5312
Score = 165 bits (182), Expect = 2e-38
Identities = 156/198 (79%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
|||||| |||||||||| ||| |||||||| ||||||| | |||||| |||| || |
Sbjct 1806 AAAGAATTTTACAATCCTAAGA-CCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTT 1864
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| ||| ||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 1865 CGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 1924
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
||| ||||| | | |||||||||| | ||| ||||| | || |||| || |||
Sbjct 1925 CCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTA 1984
Query 262 CCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 1985 CCTCACCAACTAGCTAAT 2002
>seq129
Length=23434
Score = 134 bits (148), Expect = 3e-29
Identities = 118/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || ||| |||||| ||| ||||| |||||||||||||||||||||||||| |||
Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252
||||||||| ||||||||| | | |||||||||| | ||| ||||| | || |||
Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313
Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279
| ||| ||||| | || |||| |||||
Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAAT 23286
>seq1215
Length=1293
Score = 105 bits (116), Expect = 1e-20
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230
|||| ||||||||| ||| |||||||||||| ||| ||||| || | |||||||||| |
Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60
Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCC 290
||| ||||| | || |||| ||| ||||| | || |||| ||||| |||| |
Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120
Query 291 CCATCGTACACCGATGAATCTTT 313
||||| || ||||| |||||||
Sbjct 121 CCATCCTATTCCGATAAATCTTT 143
>seq1666
Length=670
Score = 86.0 bits (94), Expect = 1e-14
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232
|||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| |
Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611
Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| ||||| |||| ||| || ||| ||| || ||||||||||
Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAAT 564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068780654720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |