Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1775 297 4e-78 seq902 286 7e-75 seq819 271 2e-70 seq365 168 1e-39 seq400 165 2e-38 seq129 134 3e-29 seq1215 105 1e-20 seq1666 86.0 1e-14 >seq1775 Length=549 Score = 297 bits (328), Expect = 4e-78 Identities = 286/361 (79%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCT--CCCACAC 58 ||||||||||||||||||||||| ||||||||| || |||| | || ||| | | ||| Sbjct 527 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTATAGTACCTTCA-GCTTACTCTCAC 469 Query 59 GTG-GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117 | | | |||||| |||| || ||||| |||||||| || |||| | ||||||| || Sbjct 468 GAGAGTAGGTTTC-TTCCTGTACAAAAGCAGTTTACACACCATAGATGCGTCATCCTGCA 410 Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177 ||| | |||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 409 CGCGGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCG 350 Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237 ||||||| ||| |||||||||||| ||| ||||||||| || |||||||| ||||||| | Sbjct 349 TAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACC 290 Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGT 297 |||| | | || ||| ||||||||| || |||| ||||||| |||||| | |||| | Sbjct 289 CATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTT 230 Query 298 ACACCGATGAATCTTTAATGA-TGATACCATGCAATCTCATCATACCATCAGGTATTAAT 356 | ||| || |||||||||| | | | | |||| | ||| || || |||||||||| Sbjct 229 ATACCAATTAATCTTTAATAATTAAAAAGATGCCTTTTCAATTAACTATAAGGTATTAAT 170 Query 357 C 357 | Sbjct 169 C 169 >seq902 Length=1850 Score = 286 bits (316), Expect = 7e-75 Identities = 251/313 (80%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | ||||||| || | |||||| Sbjct 33 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCCTTCGGTACATTCAGCTTATTACACGT 92 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | ||||||||| ||||||| ||||||||| || || || || |||| ||||| Sbjct 93 AATAAGGTTTATTCCCGAATAAAAGCAGTTTACAACCCAGAGGGCCGTCTTCCTGCACGC 152 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||||||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 153 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 212 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||||||| |||||||||| |||||| ||| Sbjct 213 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAGACAT 272 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| |||||||||||||| |||| |||||| |||| |||||| || Sbjct 273 CGTCGCCTTGGTGAGCCGTTACCCCGCCAACTAGCTAATGTCACGCGAGCCCATCTTAAT 332 Query 301 CCGATGAATCTTT 313 || || ||| ||| Sbjct 333 CCTATAAATATTT 345 >seq819 Length=2095 Score = 271 bits (300), Expect = 2e-70 Identities = 237/295 (80%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||| ||||||| | |||||||| || | |||||||| Sbjct 544 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTCAGGTACATTCAGCTTTCCACACGT 485 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||| | |||||||||| | ||||| ||||||||| || ||| | ||||||| ||||| Sbjct 484 GGAAAGGTTTATTCCCTGACAAAAGCAGTTTACAACCCATAGGGCAGTCATCCTGCACGC 425 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | |||||||||||| | | |||||||||||||||||| ||||||||||||||||| Sbjct 424 GGCATGGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 365 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||||||| | |||||||| |||||| || Sbjct 364 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAAGAT 305 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | || ||| ||||||||||| || |||| ||||| ||| | |||||| Sbjct 304 CACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATCTTGCGCGTGCCCATC 250 >seq365 Length=5917 Score = 168 bits (186), Expect = 1e-39 Identities = 224/313 (72%), Gaps = 15/313 (5%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||| ||| |||||| || || | Sbjct 3323 GGCTGCTGGCACGTAGTTAGCCGGTGCTTTTTCTGCAGGTACCGTCACTTTCGC------ 3376 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || |||||| ||||||| |||||||| ||| || || |||||| |||||| Sbjct 3377 --------TTCTTCCCTACTAAAAGAGGTTTACAACCCGAAGG-CCGTCATCCCTCACGC 3427 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || || |||||| ||||||||| |||||||||||||||||| Sbjct 3428 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 3487 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || | Sbjct 3488 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 3547 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || |||| ||| ||||| | || || | || || | ||| ||||| | Sbjct 3548 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCCGAA 3607 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 3608 CCGATAAATCTTT 3620 >seq400 Length=5312 Score = 165 bits (182), Expect = 2e-38 Identities = 156/198 (79%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||||| |||||||||| ||| |||||||| ||||||| | |||||| |||| || | Sbjct 1806 AAAGAATTTTACAATCCTAAGA-CCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTT 1864 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 1865 CGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 1924 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||| ||||| | | |||||||||| | ||| ||||| | || |||| || ||| Sbjct 1925 CCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTA 1984 Query 262 CCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 1985 CCTCACCAACTAGCTAAT 2002 >seq129 Length=23434 Score = 134 bits (148), Expect = 3e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| ||| ||||| |||||||||||||||||||||||||| ||| Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||||||||| | | |||||||||| | ||| ||||| | || ||| Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| ||||| | || |||| ||||| Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAAT 23286 >seq1215 Length=1293 Score = 105 bits (116), Expect = 1e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||| ||||||||| ||| |||||||||||| ||| ||||| || | |||||||||| | Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCC 290 ||| ||||| | || |||| ||| ||||| | || |||| ||||| |||| | Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120 Query 291 CCATCGTACACCGATGAATCTTT 313 ||||| || ||||| ||||||| Sbjct 121 CCATCCTATTCCGATAAATCTTT 143 >seq1666 Length=670 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| |||| ||| || ||| ||| || |||||||||| Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAAT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068780654720