Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq194 226 9e-57 >seq194 Length=13415 Score = 226 bits (250), Expect = 9e-57 Identities = 306/421 (73%), Gaps = 34/421 (8%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12501 ATTGGGTAATTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 12560 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| ||||||||||||||||||||| |||| | |||||||||||||| || ||| Sbjct 12561 TCTCCGGAGTCGAACCCTAATTCCCCGTTATCCGTCAACACCATGGTAGGCCAATACCCT 12620 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 ||||||||||||||||| |||| || || || | | || || ||| Sbjct 12621 ACCATCGAAAGTTGATAAAGCAG--ATACACATACGGTATGTTTTGTTAAAAATCA-GCG 12677 Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312 | | |||| ||| ||| | | | |||| ||| ||| ||| Sbjct 12678 -------AGGATATTTTGAGTCAACCATTA------------TTTGG--TTTAATCAAAT 12716 Query 313 AAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 ||| |||| |||| || | | ||| ||||||||||| ||||||||| | || Sbjct 12717 AAACGCACC----ACGAATGTGGCTTATGAAGCGTGTATTAGCTCAAGAATTACCTCAGT 12772 Query 373 TATCCATGTAGTAAGGTA-CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 |||||| | ||| || || | || | ||| ||| | |||||||| | ||| | Sbjct 12773 TATCCA---ACTAAAATATTTACCGTGTAGTCTATAGCTGTTATAATGAGCTTTCCGCGG 12829 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 |||||| |||| ||| || |||||| |||||||||||||||||||||| | ||||| | Sbjct 12830 TTTCAC-GTAT-GATACGTTGTACTTATACATGCATGGCTTAATCTTTGAAATAAGCACA 12887 Query 492 T 492 | Sbjct 12888 T 12888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510372661760