Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 138 9e-28 seq39 131 1e-25 seq5 98.7 8e-16 >seq15 Length=622252 Score = 138 bits (152), Expect = 9e-28 Identities = 1125/1803 (62%), Gaps = 42/1803 (2%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGC-CTTGGTCCTAAGATAGTACATGCCGG 65135 ||| || || |||| || |||| | |||| | |||| || |||| || ||||| || | Sbjct 204906 ATCAACGGTAAACTTAATAGCATCAACAGCTGGTCTTGTTCTTAAG-TAATACATTCCAG 204848 Query 65136 TCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCT 65195 |||| | ||| ||| ||| ||||||||| || || ||||| | || | Sbjct 204847 TCTTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACGGCATATGTTGGTT 204788 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 || ||||| | ||| | || ||| ||||| |||||| |||||||| ||||||| Sbjct 204787 TTGCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCAGCCA 204728 Query 65256 TGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||||||||| | || || ||||| || ||||| || || | | Sbjct 204727 TCTCAATGATATCCTTTTGAGAAATTTCCCAAACAGTCTTATAAAGTTCCTTGATATGTG 204668 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 |||| || | | || | || | ||||||| | || ||||| ||| | | | Sbjct 204667 TTGGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATTTCATT-CATAACT 204609 Query 65376 ACT-CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || | |||||| | || || | || || || | ||| |||| | | |||| Sbjct 204608 TCTTCACTCCACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGATTAACAATTTGG 204549 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || || || |||||||| | | || || || || ||||||| |||||| Sbjct 204548 AAGTCTCCAGAGAGAACACGACGTGTAAATATATTAGAAGTATATGGTTCAATAGATTCA 204489 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 | || |||||||||||||||||||| ||||||||||| ||||| | || | || ||| Sbjct 204488 TTATTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATAAAAGGGAATTT 204429 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 | | || | | | |||| || | ||||| |||| | ||| | ||| | | Sbjct 204428 CTTACACCATGCTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCATAA--GTTACTTG 204371 Query 65615 TCG--ACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | |||| | |||||||| | ||| | |||| || | ||||| || Sbjct 204370 GTGTTACATTC------CACATATCATATTGTAAAATTCCTTTAGAAACTGGTGATCCAT 204317 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | | | || || ||| |||| || | || ||| | ||| | || || Sbjct 204316 GATATGTTTCATATGGTCCATCCTTAGCAGCTAATTCGCAGGAAGCCTCCAAAGCTCCAT 204257 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATC-GCTCTCGTACGGC 65791 |||||| || || ||||| ||||||||| ||| | | | | | | || Sbjct 204256 GATAAATAGTTTCAAAAATTTTCTTATTAAGTTCTTTGGCCCGAGGAGATGT-GAATGG- 204199 Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| | ||| || | |||| || || | |||||||| ||||| || ||||| ||||| Sbjct 204198 ATATCTCATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATGGGGCGATG 204139 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 | || || || | |||||||||||||| || ||||||| ||| ||||| ||| Sbjct 204138 TCTAAAGTTTGATTTCTTTGCCTCAGGTACAGGATAATAATTGACATCAATAATTTTATT 204079 Query 65911 CAAATTGCGTGTCACCACATGCACGATAC--GTCGCAATTGTTCGAAATCAAAATGTTTA 65968 |||||| | || | || || || | | | ||| | |||| ||| Sbjct 204078 CAAATTTTTAG-CAAGA-ATCTTAGAAACAAGATGAAGTTGATTAAAATTAAAT------ 204027 Query 65969 GGACGATCGGGAGTGCCGGACACCA-CAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 || | | | | | | | || | || | | |||| ||| | | || || Sbjct 204026 -GATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAAATTACA 203968 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||||| | || || ||||| ||| || |||||||| || || |||||| || Sbjct 203967 AACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGAACATTT 203908 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 || || ||||| || ||||||||||| || | ||| || ||||||||| | ||| || Sbjct 203907 AATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAACCATATA 203848 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 ||||| || || || | ||| ||| || ||||||| | | | ||||| | Sbjct 203847 TGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGCCAAATAACCCTAGCCTTGAT 203788 Query 66208 CG----TACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 | ||| ||| | | || || || | | ||| | | ||| || Sbjct 203787 TTGTTTTCTGTAACGCT-----TCTCAGTCTCATACTTTGTGTACAATTTTTCAAATTCA 203733 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| || | | |||||| | || |||||||||| ||||||| | Sbjct 203732 TCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATCAATGACCAATATGAA 203673 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || | ||| ||||| |||||| | |||||| | ||| | | ||||| | ||| || Sbjct 203672 TCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACCATAGAATAAATCACGA 203613 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGC 66441 || |||| ||| || || |||||| | ||| || | || || | || || || Sbjct 203612 GCACGTTCCTCTTCTGGTCCTGTATTTTT-CTTAAGATCCAAAAATTCCATAATATCTGC 203554 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 |||||||||||||| || || || || | || | || |||||||| || || Sbjct 203553 ATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAAC 203494 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || | || ||||||||| || | |||||| ||||| | || || ||| | ||||| Sbjct 203493 ATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGTTCCATT 203434 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 || || | || ||||| || || ||| |||||||| | |||||||| || Sbjct 203433 AGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAACATTTAATCCAATACCTCC 203374 Query 66622 GGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 || | || || || |||||| | || ||| | || || ||||| || || Sbjct 203373 AGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTCAATAGAATC 203314 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 || || || | | | | |||||| | ||| || | ||| | || || Sbjct 203313 TCCAGCCATTGTTAATAAGAAACATGAAGACAATTGTGGACGAGTTGTTCCTGCATTAAA 203254 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 || || || | ||| || ||||| | | | ||||| ||||||| || ||||| || Sbjct 203253 TAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAATTGTATGTTTCGATAAC 203194 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCG 66861 | |||||| | ||| |||||||| || | ||| || ||| || | | ||| || | Sbjct 203193 TGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTCATAAGTAAATGTTGTGGTCT 203134 Query 66862 TTC 66864 ||| Sbjct 203133 TTC 203131 >seq39 Length=206625 Score = 131 bits (144), Expect = 1e-25 Identities = 459/707 (65%), Gaps = 15/707 (2%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||| ||||| || || || |||||||| ||||| | ||| | || | | Sbjct 49377 GCCTTCTTTGCTGCTTCCGATGGAATTGTCAATGAAAATTTGGTTGAAAGATTTTCAAAA 49318 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || ||||| | || || |||| || || || || || ||||| ||||||||| | Sbjct 49317 GAAGTCCAAGTCCCTGAAGCACGTTTCTTTTATGGATTTCAAATTGCTATGGAGAATATT 49258 Query 61333 CACTCGGAGATGTA--CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTG 61390 || |||||||| | ||| || || || || ||| | || | ||| | Sbjct 49257 CATAGTGAGATGTATTCCAAGTTA--ATTGAAACATATATCCGTGACACTGATGAAAGAA 49200 Query 61391 A-ACGATTGTTCAATGCCATCG-AGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC 61448 | | | || |||||||| | ||| | | | ||| ||| || |||||||| Sbjct 49199 ATAAGCTT-TTCAATGCTTTAACAGA-GTTTGAATTTATCAAGAAGAAGGCTGATTGGGC 49142 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 || | ||||| | | || | || | ||||| ||||| | | || ||||| | Sbjct 49141 TTTAAGATGGATTAACGATAAGAATGCATCTTTTGGAGAACGTATTATTGCTTTTGCCGC 49082 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || || |||||||| ||| || ||||| ||||||||||||| || |||||||| Sbjct 49081 TGTTGAAGGAATATTTTTCTCTGGTTCTTTTGCTTCAATCTTTTGGTTAAAAAAACGTGG 49022 Query 61569 ACTTATGCCCGG--TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 | | ||||| || | || | |||| ||||| || || || | || || || | ||| Sbjct 49021 ATTAATGCCAGGTTTGTGTCATTCA--AATGAATTAATCTCCAGAGATGAAGGATTACAT 48964 Query 61627 TGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 | ||||||||| | | | || | | ||||| | |||| ||||| | |||||| Sbjct 48963 AGAGATTTTGCTTGTCTCATGTTTA---GTTATCTTGAGAATAAACCGTCTGTAGAGCGT 48907 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 ||| ||| || || | | || || || || |||||| | | ||||| ||| | Sbjct 48906 GTGCATGAAATAATTAGAAATGCTGTCGAAATTGAGAAGGAATATTTAACTGATGCTCTT 48847 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || || | || || ||||||| || |||||| || ||||||| |||||| Sbjct 48846 CCTGTTGATATGATTGGTATGAATTCAAGATTAATGTGTACCTACATTGAATATGTTGCT 48787 Query 61807 GACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 || | || || || | ||| || ||||| ||||| ||||||||| Sbjct 48786 GATCACCTTTTAACTGAACTAAACATGCCAAAAATTTATAAGGTTAAAAATCCATTTGAT 48727 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||||| | |||| | || || ||||| ||||| || || || Sbjct 48726 TTCATGGTAAACCTTTCAATTGAAGGAAAGACAAATTTCTTTGAAAA 48680 >seq5 Length=1449561 Score = 98.7 bits (108), Expect = 8e-16 Identities = 414/646 (64%), Gaps = 12/646 (2%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||| | | ||| || ||||| || || | | || | ||| | |||||||| Sbjct 1212855 GCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTCT 1212796 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 || || | ||| || |||| | || ||||| | ||||||||| || ||||| || Sbjct 1212795 GTACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACAA 1212736 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 ||| || || | |||||| || || || || |||| ||| ||| || ||| Sbjct 1212735 TGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTGC 1212676 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC--TTTGCGTT--CGTAATGTTC 66243 || || |||||||| | || | | || | ||| | || | || | | Sbjct 1212675 CAGAGCATTCGTGCCTTGATTTGACTT----CTATAACGTTTTTCATTTTCATATTTAAC 1212620 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACA-GACATGGACACTTGTGTGGAC 66302 || | ||| || ||| ||||| ||| || ||| |||||| | ||| |||| Sbjct 1212619 ATATAAAGTTTCAAATTCTTCTCCCCA-ACTATTATCAAGACCTGGACATTCGTGAGGAC 1212561 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 |||||| ||||||| | |||| ||| ||||| |||||||| |||||| | ||| | Sbjct 1212560 ACATCAATGACCAATAAGAATCCCTTTCAACACGTTTCATAAATAAATCAGGAACCCATA 1212501 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG-TCG 66421 | || || | ||| || || |||| ||| || || |||||| | ||| | Sbjct 1212500 AACCATAAAATAAATCACGAGCACGTTCCTCTTCCGGACCTGTATTTTT-CTTAAGATTT 1212442 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | || | ||| || || |||||||||||||| | || || || || | || | | Sbjct 1212441 AAAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCTT 1212382 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 || |||||||| || || || ||||| || || || || || ||||| || || Sbjct 1212381 TTATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAACT 1212322 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601 | || || || | ||||| || || || |||||| || || |||| | | Sbjct 1212321 AATCCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATTA 1212262 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAAT 66647 ||| | ||||||| ||||| || || || || |||||||| Sbjct 1212261 ACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAAT 1212216 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 ||||| || || || |||| ||| || | | ||| | || || || |||||||| Sbjct 1213422 ACTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAGGTTCAAAT 1213363 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 || ||| | || || | |||||| ||||| ||||| |||||||| ||||| ||||||||| Sbjct 1213362 GACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTACCAACAAT 1213303 Query 65549 GAGTTTC 65555 || |||| Sbjct 1213302 GAATTTC 1213296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559229898400