Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq349 120 9e-23 >seq349 Length=6141 Score = 120 bits (132), Expect = 9e-23 Identities = 265/393 (67%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCT 2582 ||| ||| || | ||||| || || | ||| ||||||||||||| ||||| || Sbjct 4553 CCCGATCGTCTCGATCGAGGACGGCTGCGCCGAGGACGACTGGGACGGCTGGAAGCTGCT 4494 Query 2583 TACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACAC 2642 || || || | || | || || || |||| || || || | ||||| || ||| | Sbjct 4493 GACCGACCGGATCGGCGACAAGGTGCAGCTGGTCGGCGATGATCTGTTCGTGACCAACTC 4434 Query 2643 TGCTTACCTTGAAAAAGGTATTGCAGAACA-CGCTGCTAACTCAATCCTTATCAAAGTTA 2701 ||| || | ||||| ||| || ||| || || || || | ||||| | Sbjct 4433 GGCTCGTCTGCGCGACGGTATCA-AGATGGGCGTTGCCAATTCCATTCTGGTTAAAGTGA 4375 Query 2702 ACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA--AGAAGCTGG 2759 |||| ||||| || ||| | ||||| | || || | |||| ||| | |||| || Sbjct 4374 ACCAGATCGGCACATTGTCCGAAACACTGGATGCCGTGGAAACAGCGCATAAGAAC--GG 4317 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 || || ||||| | ||||||||||| |||||||| |||||||| || || || ||| | Sbjct 4316 CTATACCGCAGTTATGTCACACCGTTCGGGTGAAACAGAAGATTCCACGATTGCGGATCT 4257 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || ||||| || || || || || || || || || || ||||| | ||||| | Sbjct 4256 CGCTGTTGCTACCAATTGCGGCCAGATCAAAACCGGCTCGCTGGCACGTTCAGACCGGTT 4197 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 || ||||||||||| || | || || ||||| Sbjct 4196 GGCAAAATACAACCAGCTGATCCGCATTGAAGA 4164 Score = 87.8 bits (96), Expect = 6e-13 Identities = 170/249 (68%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 2053 CCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATGATGAAC 2112 || || ||| |||| | ||||| ||||| | | | || || |||||||||||| Sbjct 5005 CCGCTCTACCGCTATGTCGGCGGCGTCAACGCCCATATCCTGCCGGTGCCAATGATGAAC 4946 Query 2113 ATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAATTTATGATTGTA 2172 ||||||||||| || | || | || || || | ||| || ||||| ||||| Sbjct 4945 ATCATCAACGGCGGCGCACATGCGGATAACCCGATTGATTTTCAGGAATTCATGAT---- 4890 Query 2173 CCTGCTGGT--GCACCAACA--TTCAAAGAAGCGCTTCGTTGGGGTGCTGAAATCTTCCA 2228 ||||| ||| || || | | ||| ||||| || || ||| || ||||||||||| Sbjct 4889 CCTGCCGGTGGGCGCCGAGAGCTTCTCGGAAGCCCTGCGCATGGGCGCGGAAATCTTCCA 4830 Query 2229 CGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGACGAAGGTGG 2288 ||| || ||||| ||| |||| || | | || ||| |||||||||||||| Sbjct 4829 CGCCCTGAAGAAGGCCCTGAAAGCTGCCGGTCACAACACCAACGTCGGTGACGAAGGTGG 4770 Query 2289 TTTCGCACC 2297 ||| ||||| Sbjct 4769 TTTTGCACC 4761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156035046149640