Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq400 111 2e-19 seq1201 91.5 2e-13 seq583 86.0 9e-12 seq101 84.2 3e-11 >seq400 Length=5312 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 412 GGGGCCTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGAAT 353 Query 142853 CCGTTATTCTCCACCA 142868 |||||| |||||||| Sbjct 352 CCGTTAGGCTCCACCA 337 >seq1201 Length=1307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142800 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGTCCGTTAT 142859 |||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 628 TAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCATCGGTTCGATCCCGTTCA 569 Query 142860 TCTCCACCAACCATT 142874 |||||||| | ||| Sbjct 568 CCTCCACCATCGATT 554 >seq583 Length=3271 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 1969 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 1910 Query 142853 CCGTTATTCTCCACCAA 142869 |||| || ||||||||| Sbjct 1909 CCGTCATCCTCCACCAA 1893 >seq101 Length=33494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142790 TTCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCG 142849 ||||||| ||||||||||||||||||||| ||| | ||| ||| || |||| ||||||| Sbjct 25833 TTCGGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCG 25892 Query 142850 AGTCCGTTATTCTCCACCA 142868 | |||| || |||||||| Sbjct 25893 ACTCCGCTAAGCTCCACCA 25911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691443555735600