Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1151 183 5e-44 seq6 89.7 8e-16 >seq1151 Length=38431 Score = 183 bits (202), Expect = 5e-44 Identities = 181/228 (79%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | ||||| ||||||| |||||| |||||| | Sbjct 19486 GTACAAAGGGCAGGGACGTAATCAGCATGAGCTA-ATGACTCATACTTACTGGGAATT-C 19429 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || |||| |||| ||||| || | ||||| | ||||||| |||| Sbjct 19428 CTCGTTCAAGAGAAATAATTTCAATCCTCTATTCCAAACACGAAAAGCTTTCAAAAGATT 19369 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT--CAGTGTAGCGCGCGTG 177 |||| ||||| ||||||||||| | || | | || | |||||||||||||||| Sbjct 19368 ACCCAGACCTTTCGGCCAAGGTTAATAACGCTTGCTGCACTTTCCAGTGTAGCGCGCGTG 19309 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 19308 CAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCAATCT 19262 >seq6 Length=694356 Score = 89.7 bits (98), Expect = 8e-16 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 409474 CAGTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCA 409532 Query 222 AACT 225 | || Sbjct 409533 ATCT 409536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751967858580