Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 214 3e-53 seq1151 91.5 2e-16 >seq6 Length=694356 Score = 214 bits (236), Expect = 3e-53 Identities = 202/249 (81%), Gaps = 9/249 (4%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 409471 CGCCAGTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTAC- 409529 Query 74 TCAAACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGCCAGCCACCA-ACCATA 131 |||| || ||| | | ||| || | ||||||||||||| || || || || Sbjct 409530 TCAATCT--CATGCGGTTGAACACCGCTTATCCCTCTAAGAAGT-AGGTACGTCACAATT 409586 Query 132 GTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 || || ||| ||||||||||| ||| |||||||||||||||| ||||||||| | Sbjct 409587 AACGCATCA--CTAGTTAGCAGGTTAGAGTCACGTTCGTTATCGGAATAAACCAGACAGA 409644 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||| Sbjct 409645 TCAATCCACGAACTAAGAACGGCCATGCACCACCAACCACCAAATCAAGAAAGAACTATC 409704 Query 251 AATCTGTCC 259 ||||||||| Sbjct 409705 AATCTGTCC 409713 >seq1151 Length=38431 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 19324 CAGTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCA 19266 Query 77 AACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGA 113 | || ||| || || | || | ||||||||||| Sbjct 19265 ATCT--CATGCGGTTGAACACCGCTTATCCCTCTAAGA 19230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796765943772