Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2534 302 8e-80 seq23 300 3e-79 >seq2534 Length=6320 Score = 302 bits (334), Expect = 8e-80 Identities = 196/214 (92%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| | ||||| |||| | || |||| ||||||||||||||||||||||||| Sbjct 5378 TACTAAGTAGGATTACTATTGCAACAACCAGTCAACAGTAGGGTAAAACTAACCTGTCTC 5319 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 5318 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGAGGGTGAACAATCCAACGCTTGGCG 5259 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5258 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 5199 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 || ||||||||||||||||||||||||||||||| Sbjct 5198 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTG 5165 >seq23 Length=471031 Score = 300 bits (332), Expect = 3e-79 Identities = 195/213 (92%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| | ||||| |||| | || |||| ||||||||||||||||||||||||| Sbjct 183387 TACTAAGTAGGATTACTATTGCAACAACCAGTCAACAGTAGGGTAAAACTAACCTGTCTC 183446 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 183447 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGAGGGTGAACAATCCAACGCTTGGCG 183506 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183507 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 183566 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || |||||||||||||||||||||||||||||| Sbjct 183567 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCT 183599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854362303872