Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1151 221 2e-55 seq6 100 5e-19 >seq1151 Length=38431 Score = 221 bits (244), Expect = 2e-55 Identities = 209/260 (80%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||| | ||| |||| | ||| || ||||| |||||||||||||||| Sbjct 19230 TCTTAGAGGGATAAGCGGTGTTCAACCGCATG--AGATTGAGT-AATAACAGGTCTGTGA 19286 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACAGAGC--CAACGAGTTCAT 188 ||||||||||||||| |||| ||||||||||||||||| | || || ||| | ||| | Sbjct 19287 TGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACACTGGAAAGTGCAGCAA-GCGTTATT 19345 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||||||| ||||||||||||||||| | ||| | ||||| | || |||||| || Sbjct 19346 AACCTTGGCCGAAAGGTCTGGGTAATCTTTTGAAAGCTTTTCGTGTTTGGAATAGAGGAT 19405 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || ||||||| ||||| |||||||||| || |||||| | ||||| ||| | | ||| Sbjct 19406 TGAAATTATTTCTCTTGAACGAGGAATTCCCAGTAAGTATGAGTCATTAGCTCATGCTGA 19465 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 19466 TTACGTCCCTGCCCTTTGTA 19485 >seq6 Length=694356 Score = 100 bits (110), Expect = 5e-19 Identities = 84/100 (84%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||| | ||| |||| | ||| || ||||| |||||||||||||| Sbjct 409570 CTTCTTAGAGGGATAAGCGGTGTTCAACCGCATG--AGATTGAGT-AATAACAGGTCTGT 409514 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 ||||||||||||||||| |||| ||||||||||||||||| Sbjct 409513 GATGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACACTG 409474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947158209536