Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20exspectatus_20[WormBase_20PRJEB6009-WS248_202015-08- 25] 4,412 sequences; 177,635,997 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2815 178 4e-42 seq2709 154 5e-35 seq811 143 9e-32 seq2618 134 5e-29 >seq2815 Length=4299 Score = 178 bits (196), Expect = 4e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 219 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||| ||||| ||| || ||| || |||||||||||||||||||| Sbjct 218 CCCGCCGTTTACCCTCGCTTATGCAGATTACTCCACGTTAACATTCAGAGCACTGGGCAG 159 Query 515 AAATCA 520 |||||| Sbjct 158 AAATCA 153 Score = 136 bits (150), Expect = 1e-29 Identities = 75/75 (100%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4299 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 4240 Query 392 ATTCATGCGCGTCAC 406 ||||||||||||||| Sbjct 4239 ATTCATGCGCGTCAC 4225 >seq2709 Length=5116 Score = 154 bits (170), Expect = 5e-35 Identities = 93/98 (95%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCGCTGTTTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 60 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||||||||||||||||||||||||||||||||||| || Sbjct 61 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCATTA 98 Score = 141 bits (156), Expect = 3e-31 Identities = 78/78 (100%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5023 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 5082 Query 457 CGCCGTTTACCCGCGCTT 474 |||||||||||||||||| Sbjct 5083 CGCCGTTTACCCGCGCTT 5100 >seq811 Length=62883 Score = 143 bits (158), Expect = 9e-32 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 25916 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGAGAATCTC 25857 Query 384 GTTAATCCATTCATGCGCGTCA 405 |||||||||||||||||||||| Sbjct 25856 GTTAATCCATTCATGCGCGTCA 25835 >seq2618 Length=5766 Score = 134 bits (148), Expect = 5e-29 Identities = 74/74 (100%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5766 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 5707 Query 392 ATTCATGCGCGTCA 405 |||||||||||||| Sbjct 5706 ATTCATGCGCGTCA 5693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635127854976