Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5573 178 2e-42 >seq5573 Length=32644 Score = 178 bits (196), Expect = 2e-42 Identities = 180/228 (79%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | ||||| ||||||| |||||| |||| ||| Sbjct 31854 GTACAAAGGGCAGGGACGTAATCAGCATGAGCTA-ATGACTCATACTTACT-GGAAATTC 31797 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || |||| |||| ||||| | | ||||| | ||||||| |||| Sbjct 31796 CTCGTTCAAGAGAAATAATTTCAATCCTCTATTCTAAACACGAATAGCTTTCAAAAGATT 31737 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT--CAGTGTAGCGCGCGTG 177 |||| ||||| ||||||||||| | || | | || | |||||||||||||||| Sbjct 31736 ACCCAGACCTTTCGGCCAAGGTTAATAACGCTTGCTGCACTTTCCAGTGTAGCGCGCGTG 31677 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 31676 CAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATT-ACTCAATCT 31630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751899772970