Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5573 141 2e-31 >seq5573 Length=32644 Score = 141 bits (156), Expect = 2e-31 Identities = 177/236 (75%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 77 ACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATA 136 ||||||| |||| | ||| | ||| ||||| |||||| |||| | ||| ||||||||| Sbjct 30972 ACTTTGATTAAATCAATGTGATTAAAACAGGCGTTTGCTTGAATGCTTTATCATGGAATA 31031 Query 137 ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 |||||||| ||| | ||| || ||| ||| ||| | | ||| || ||||||||||| || Sbjct 31032 ATAGAATATGAC-TTCGG-TCCATTCTGTCGGTCT-TGGGATCGAAGTAATGATTAAAAG 31088 Query 197 GGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 | | | ||||| | || |||| || |||||||||||||||||| || Sbjct 31089 GAACAACTCGGGAGCATCCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGCAGCGAG 31148 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 || | ||| ||||||||| || ||||| |||||||||||||||| ||||||||| Sbjct 31149 ACGACCTATTGCGAAAGCATTTTCCAAGAATGTTTTCATTAATCA-AGAACGAAAG 31203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915074086784