Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4358 141 4e-31 >seq4358 Length=739 Score = 141 bits (156), Expect = 4e-31 Identities = 214/305 (70%), Gaps = 27/305 (9%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||| |||||| || || |||||| |||||| | || Sbjct 356 CGACCCGTCTTGAAACACGGACCAAGAAGTCTAGTATGTACGCGAGTCATTGGGTATTAA 415 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGG---------------TGGGAACCCGTG--- 506 ||| | ||| ||| || ||||| || || || || || | Sbjct 416 ACCTATTGGCGCAATAAATGTGAAGGGCGGCTTGTTCGTCTGATATGTGATCCGTCGGTC 475 Query 507 ------AG-GGTGCACCATCGACCGAT-CCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 || || ||| ||| | || || ||| || | | | ||| | ||| |||| Sbjct 476 TCGGCCAGCGGCGCAACATAGTCCCATGCCTACTGCTTGCAG-TGGTGTGGAGATGGAGC 534 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || | ||||||||||||||||||||||||||||| ||| |||| ||||||||| Sbjct 535 GTACACACTAGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGAGGAAA 594 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||| |||| | || |||||||||| ||||||||||||||||| | | ||||||||| Sbjct 595 CTCTGATGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCGGACTCGGGTATAGG 654 Query 679 GGCGA 683 ||||| Sbjct 655 GGCGA 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079704890900