Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5573 197 2e-48 seq1112 118 2e-24 >seq5573 Length=32644 Score = 197 bits (218), Expect = 2e-48 Identities = 195/245 (80%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | ||| Sbjct 31692 CAGTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTAC-TCA 31634 Query 77 AACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA--TAGT 133 | || ||| | | ||| || | ||||| ||||||| || || || || Sbjct 31633 ATCT--CATGCGGTTGAACACCGCTTATCCCTGTAAGAAGT-AGGTACGTCTCAATTAAC 31577 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 || ||| ||||||||||| |||||||||||||||||||| ||||||||| ||| Sbjct 31576 GCATCA--CTAGTTAGCAGGTTAGAGTCTCGTTCGTTATCGGAATAAACCAGACAGTTCA 31519 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||| ||||||||||| ||||||||||||| ||| |||||||||||| |||||||| Sbjct 31518 ATCCACGAACTAAGAACGACCATGCACCACCAACCACCAAATCAAGAAAGAACTATCAAT 31459 Query 254 CTGTC 258 ||||| Sbjct 31458 CTGTC 31454 >seq1112 Length=5484 Score = 118 bits (130), Expect = 2e-24 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||||||||||| ||| ||||||| |||| ||||| ||||||||||||||||||||||| Sbjct 536 GTTCGTTATCGACTTTATCCAGACAGATCAATCCACGAACTAAGAACGGCCATGCACCAC 595 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| |||||||||||| ||||||||||||| Sbjct 596 CAACCACCAAATCAAGAAAGAACTATCAATCTGTC 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796693801998