Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5573 78.8 1e-12 >seq5573 Length=32644 Score = 78.8 bits (86), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 16 ACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATA 75 ||||||| |||| | | | | ||| ||||| |||||| |||| | ||| ||||||||| Sbjct 30972 ACTTTGATTAAATCAATGTGATTAAAACAGGCGTTTGCTTGAATGCTTTATCATGGAATA 31031 Query 76 ATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATA 135 |||||||| ||| | ||| || ||| ||| ||| | | ||| || |||||||| || | Sbjct 31032 ATAGAATATGAC-TTCGG-TCCATTCTGTCGGTCT-TGGGATCG-AAGTAATGATTAAAA 31087 Query 136 CGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | | ||||| | || |||| || | |||||||||||||||| Sbjct 31088 GGAACAACTCGGGAGCATCCGTATCGCTGCGTGAGAGGTGAAATTCTTGGA 31138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511931760320