Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5573 210 4e-52 >seq5573 Length=32644 Score = 210 bits (232), Expect = 4e-52 Identities = 210/263 (80%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||| ||||| | ||| |||| | ||| || ||||| |||||||||||||| Sbjct 31596 CTTCTTACAGGGATAAGCGGTGTTCAACCGCATG--AGATTGAGT-AATAACAGGTCTGT 31652 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACAGAGC--CAACGAGTTC 186 ||||||||||||||||| |||| ||||||||||||||||| | || || ||| | ||| Sbjct 31653 GATGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACACTGGAAAGTGCAGCAA-GCGTTA 31711 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA-CTCTGTCGTGCTGGGGATAGAG 245 | |||||||||| ||||||||||||||||| | ||| || | ||||| | | |||||| Sbjct 31712 TTAACCTTGGCCGAAAGGTCTGGGTAATCTTTTGAAAGCTAT-TCGTGTTTAGAATAGAG 31770 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||| ||||||| ||||| |||||||||| | |||||| | ||||| ||| | | Sbjct 31771 GATTGAAATTATTTCTCTTGAACGAGGAATTTCCAGTAAGTATGAGTCATTAGCTCATGC 31830 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 31831 TGATTACGTCCCTGCCCTTTGTA 31853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947069684224