Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11626 307 3e-81 seq1450 187 8e-45 >seq11626 Length=18656 Score = 307 bits (340), Expect = 3e-81 Identities = 298/373 (80%), Gaps = 19/373 (5%) Strand=Plus/Minus Query 48 TTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 |||||||||| ||||| | ||| | |||||| ||| | ||| |||||| || |||||| Sbjct 14041 TTAGGACACCCACGTTACGTTTTGATAGATGTACCGGCACAGTCAAACTTCCGGCCTGAC 13982 Query 108 AATGTCATCAACCCGGATCG-----GC-CCGCGAAG-GAC-CTTAACGCCAGAAAATGGT 159 | |||| || |||| ||| || ||| || ||| |||||| |||||| || Sbjct 13981 ACTGTCTTCGGTCCGGGTCGCGAAAGCTCCGAGAGCCGACGCTTAACACCAGAA---GGA 13925 Query 160 CGGTGAA-GA---CCAGTTCC-GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGG 214 || ||| || ||| | || || | | || |||||||| || |||| | ||||||| Sbjct 13924 AGGAGAACGAGCTCCAATCCCCGCATTACCGAATAAGTAAAGAATCGATGAAAGTAGTGG 13865 Query 215 TATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAA 273 ||||||| ||||| ||||| | ||||||||||| |||| |||||||| | ||||| Sbjct 13864 TATTTCAATTGCGACCGAA--GTCTCCCACTTATACTACGTCTCTCAAGACTCGTCACAG 13807 Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 |||| | ||||||||| |||||||||||||||||||||||||| || |||||||||| Sbjct 13806 AGTCAAATTAGAGTCAAACTCAACAGGGTCTTCTTTCCCCGCTGTTTTTTCCAAGCCCGT 13747 Query 334 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13746 TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 13687 Query 394 TCATGCGCGTCAC 406 ||||||||||||| Sbjct 13686 TCATGCGCGTCAC 13674 Score = 188 bits (208), Expect = 2e-45 Identities = 128/144 (89%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 12383 GAATCTCACCGATCCATTCATGCGCGTCACTAATTAGATGACGAGGCACTTGGCTACCTT 12324 Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||| |||||||||||||||||||||||||| ||| || ||| || || Sbjct 12323 AAGAGAGTCATTGTTACTCCCGCCGTTTACCCGCGCTTATGCAGATTACTCCACGTTAAC 12264 Query 497 ATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||||| Sbjct 12263 ATTCAGAGCACTGGGCAGAAATCA 12240 >seq1450 Length=1769 Score = 187 bits (206), Expect = 8e-45 Identities = 156/189 (83%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| Sbjct 287 TTCCCTTGGCTGTGGTTTCACTAGATATTAAATAGGGACAGTGGGAATGTCGTTAATCCA 228 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 ||| ||| | ||||||||| | ||||| |||||||| | ||||| | ||||||| ||| Sbjct 227 TTCCTGCCCATCACTAATTGAACGACGATGCATTTGGATTGCTTAAAAAAGTCATAATTA 168 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGG 510 ||||| || | ||||||||||| | || || || ||| || ||||||| | |||||| Sbjct 167 CTCCCTCCATCTACCCGCGCTT--ATAAAGCTTACTCCACCTTAACATTCAAATCACTGG 110 Query 511 GCAGAAATC 519 || |||||| Sbjct 109 GCGGAAATC 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634975029184