Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10168 150 5e-34 seq13202 102 2e-19 seq5573 87.8 5e-15 seq11523 77.0 1e-11 >seq10168 Length=7595 Score = 150 bits (166), Expect = 5e-34 Identities = 330/482 (68%), Gaps = 37/482 (8%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTG---TCGGGATTGGGTAATTTGC-GCGCCTGCTGCC 98 |||| || |||||| || | || || | | || |||| ||||| | || |||||| || Sbjct 67 TATTAATAGTCACTTCC-CTCCTTGAAATTGAGAGTGGGGAATTTTCCGCCCCTGCTCCC 125 Query 99 TT-CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 || ||| ||||||| || |||||||| ||||| ||||||||| ||||||||| |||| | Sbjct 126 TTTCCTGGGATGTGATACCCGTTTCTAAGGCTAGCTCTCCGGAGTCGAACCCTTATTCTC 185 Query 158 CGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217 ||||||||||| ||||||| || | || || ||||| | ||||||||||||| Sbjct 186 CGTTACCCGTTACAACCATGGAAGACACATAGACTTCCATCAATAGTTGATAGGGCACCC 245 Query 218 ATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 | | || | ||| ||| |||| |||| |||| || || ||||| || ||||| Sbjct 246 ACTCGACCAGTACGTCGTCGGTACAAGACCATACGATCCGCAAAATTATTCAGAGTCACC 305 Query 278 AA----GGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATAC--ACCCCT-TCCGAA 330 || | ||||| | ||| ||| ||||||||| | | || || | | Sbjct 306 AAAAGGGTTGCCCCAATCGGCCTTG-------ATCTAATAAGTGCGTGCCACTATTGCTA 358 Query 331 GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA 390 | | || ||| |||||||||| | ||||| | | | ||||| | | | | || Sbjct 359 GCAGCACGTTGGTGCACGTATTAGCTCCAAAATTAACGCAGATATCCGTTTTG---GATA 415 Query 391 CTATCAAA-----TAAACGATAACTGAT-TTAATGAGCCATTCGCAGTTTCACTGTATAG 444 | | ||| || | || || | ||||||||| ||||||| |||| ||| || Sbjct 416 CGA--AAACTGGGTAGATTATGGGTGTTAATAATGAGCCGTTCGCAGATTCA-TGTTTAC 472 Query 445 ATTGCTTA--TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | | || | ||||||||||||||||||||||||| | ||||||| || ||||| Sbjct 473 A---CATATGTTCTTAGACATGCATGGCTTAATCTTTTATCTGAGCATATCACCGCTGGC 529 Query 503 AG 504 || Sbjct 530 AG 531 >seq13202 Length=2484 Score = 102 bits (112), Expect = 2e-19 Identities = 260/388 (67%), Gaps = 31/388 (8%) Strand=Plus/Plus Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||||| ||||||||| |||| |||||||||||| ||||||| || | || | Sbjct 1788 CTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGAAGACACATAGAC 1847 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 | ||||| | ||||||||||||| | | || | ||| ||| |||| |||| | Sbjct 1848 TTCCATCAATAGTTGATAGGGCACCCACTCGACCAGTACGTCGTCGGTACAAGACCATAC 1907 Query 252 GATTCGTTAAGTTATTATGAATCACCAA----GGAGCCCCGAAGGGCGTTGGTTTTTTAT 307 ||| || || ||||| || ||||||| | ||||| | ||| ||| || Sbjct 1908 GATCCGCAAAATTATTCAGAGTCACCAAAAGGGTTGCCCCAATCGGCCTTG-------AT 1960 Query 308 CTAATAAATAC--ACCCCT-TCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||| | | || || | || | || ||| |||||||||| | |||| Sbjct 1961 CTAATAAGTGCGTGCCACTATTGCTAGCAGCACGTTGGTGCACGTATTAGCTCCAAAATT 2020 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAA-----TAAACGATAACTGAT-TTAAT 418 | | | | ||||| | | | | ||| | ||| || | || || | |||| Sbjct 2021 AACGCAGATATCCGTTTTG---GATACGA--AAACTGGGTAGATTATGGGTGTTAATAAT 2075 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTA--TACTTAGACATGCATGGCTTAATC 476 ||||| ||||||| |||| ||| || | | || | |||||||||||||||||||||| Sbjct 2076 GAGCCGTTCGCAGATTCA-TGTTTACA---CATATGTTCTTAGACATGCATGGCTTAATC 2131 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 ||| | ||||||| || ||||||| Sbjct 2132 TTTTATCTGAGCATATCACCGCTGGCAG 2159 >seq5573 Length=32644 Score = 87.8 bits (96), Expect = 5e-15 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||| |||| ||| |||| |||||| |||| || |||| || |||||||||| Sbjct 30759 GTGCTCATTGCAATGACA-GACCTCAAAGAGATCTGTCTCGTTATTGATAGTCACTACCT 30701 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTT 100 || || | | || |||||||||| ||||||||||||||| Sbjct 30700 CCTCGAATTGAGAGTGGGTAATTTACGCGCCTGCTGCCTT 30661 >seq11523 Length=38375 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 48 ATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA 107 || |||||||||||| || | | || |||||||||| |||||||||||||||||||| Sbjct 34165 ATAGTCACTACCTCCTCGAATTGAGAGTGGGTAATTTAAGCGCCTGCTGCCTTCCTTGGT 34106 Query 108 TGTGGTAGCCGTTTC 122 |||| | ||| |||| Sbjct 34105 TGTGATTGCCATTTC 34091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510192199168