Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pristionchus_20pacificus_20[genbank_20GCA_5F000180635.2_202015-04- 03] 13,758 sequences; 133,113,749 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6555 91.5 1e-13 >seq6555 Length=16063 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||||| ||||| |||| ||| ||||| ||||| || || | || || | || | Sbjct 14918 CACAAACTTAGGAAGAGCAATAGACGCGAGATTGCACACGGCAACTTCATCGGCAGACGA 14859 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || || || || ||||| | ||| ||| || || || | |||||||||||| Sbjct 14858 ATATTCAACGATCTCAGTGCATAAATTGGAGCATTTGATCGTTCCAAGATTCTGTTGATT 14799 Query 66112 ACTCTTGCGATTGCATGCATCCT 66134 |||||| |||||||||||||| Sbjct 14798 ACTCTTTGAATTGCATGCATCCT 14776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||||||||| | ||||||| ||| ||| || | ||| ||||||||||| ||| Sbjct 14506 GGACACATCAGAGTCCAATCAGAATCAGTTTCAACTCTCTTCATGAATAGATCAGGAATC 14447 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTC 66396 ||||| || |||||||||||||| |||| || ||||| Sbjct 14446 CAGAGAGCATAGAAGAGATCGCGAGCTCTTTCTTCCTC 14409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397501337537120