Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq183 123 1e-25 >seq183 Length=20465 Score = 123 bits (136), Expect = 1e-25 Identities = 110/135 (81%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 550 AGTAAGAGC-ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| ||||| |||| || | |||||||||||||||||||||||| | ||||||||| Sbjct 13720 AGTTAGAGCCATAGTAGT-GCGACCCGAAAGATGGTGAACTATGCTAGCGCAGGGTGAAG 13662 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||| |||| ||||| |||||| ||| ||||||||||| |||| | Sbjct 13661 TCAGAGGAAACTCTGATGGAAGCTCGAAGCGGTCCTGACGTGCAAATCGGTCGTATGACG 13602 Query 669 TGGGTATAGGGGCGA 683 | |||||||||||| Sbjct 13601 TTAGTATAGGGGCGA 13587 Score = 102 bits (112), Expect = 3e-19 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| | || | || | |||| || ||||| ||||||| Sbjct 14288 GAGTCGTGTTGCTTGAAAGTGCAGCGCAAAGTTGGTGATAAACATCATCTAAGGCTAAAT 14229 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | || ||||||||| ||||||| |||| ||||| || |||||||| | | Sbjct 14228 ATCCCCATGAATCCGATAGCGAACAAGTACTGTGAAGGAAAGTTGCAAAGCACTCCGAAG 14169 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||||||||| || |||||||| | | | |||||||| Sbjct 14168 AGAGAGTTAAAGAGGACGTGAAACCGATACGATGGAAGCGC 14128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989897050