Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq183 387 4e-105 >seq183 Length=20465 Score = 387 bits (428), Expect = 4e-105 Identities = 401/521 (77%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||||||||| ||| ||||||| ||| |||| | ||||||||||||| ||||| ||| Sbjct 11819 TTTGCTCTACGAGAGGTTTCTGTCCTCTCTGAGCCTGCCTTAGGACACCTACGTTACGGT 11878 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 || | |||||| ||||||||| |||||||||| || |||| || || || ||||| Sbjct 11879 TTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACGATCGTCGACGTGGATCAT 11938 Query 129 CCCGCGA--AGGACC------TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT 180 | | || |||| | |||||| || | || | ||| || Sbjct 11939 AAATTGTTCAAAACAATTTATTTAATACAAGAAAA--GTAA-TAAATTACGTCTCCATTT 11995 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTC 239 || || |||||||| | |||| |||||||||||||| | || | || | ||| Sbjct 11996 AATCGACTAAGTAAAGCATCGATGTAAGTAGTGGTATTTCAAGTACGTAGCAAGCTACTC 12055 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||| ||| ||||||||| || | || ||||||| | | ||||||||||||||||||| Sbjct 12056 CCACCTATACTACACCTCACATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAACAG 12115 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| || Sbjct 12116 GGTCTTCTTTCCCCGCTGTTTCTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATG 12175 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||| |||||||||||||||||||| |||||||| | ||| |||| Sbjct 12176 GTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAGTTACCCGACG 12235 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| || Sbjct 12236 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAATG 12295 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||| || | | ||||||| ||||||||||||||||| Sbjct 12296 GCTTTCACCATTATAACATTCATTGCACTGGGCAGAAATCA 12336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192298208