Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 >seq13 Length=696343 Score = 113 bits (124), Expect = 4e-20 Identities = 410/636 (64%), Gaps = 12/636 (2%) Strand=Plus/Plus Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 ||||| ||||| | || || ||||| ||||| || || | | || | |||||||| Sbjct 650279 GGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTC 650338 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||| || || ||| || || || | ||| |||||||| || || | ||||| Sbjct 650339 AGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCA 650398 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 |||||||| ||| ||||| |||| || || |||| ||| |||| || | Sbjct 650399 GGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTT 650458 Query 66187 CCAAAGAGCGCGTGCCTTCACCGTA---CGTA--CCGCCCTACCTTTGCGTTCGTAATGT 66241 ||| | | |||||| || | || | | ||||| | || ||| || || Sbjct 650459 GAAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCT--CATT---TTCATATCGT 650513 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 || || || ||||| || |||||| || | | | |||||| | |||||| Sbjct 650514 TCATAAAGTGCCTCGAATTCTTGACCCCAACAATCAGCTAAGCCTGGACATTCGTGTGGG 650573 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||||| ||||| |||||| ||| | |||||| | |||||| | ||| Sbjct 650574 CACATCAAAGACCACATACCATCGGTTTCAGTTCTTTTCATAAACAAATCAGGGACCCAC 650633 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCG-TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 | |||| || | || ||||| || ||||| || | || | ||| || || || Sbjct 650634 AACCCGTAAAACAAGTCACGTGCACGATTGCTG-TCTGTTCCATCATTCTTTTTTAATTC 650692 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 | || ||||| || || |||||||| ||||| ||||| ||||| || | || | Sbjct 650693 CAAAAATTCAAATATATCAGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCT 650752 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 ||| || ||||||||||| || | || ||||| || || | | ||| || || Sbjct 650753 TTTATTACCTCCTTGGTCGACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAAC 650812 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 | || ||||| |||||| || || | |||| | |||| || || ||| ||| Sbjct 650813 TAAACCATTAGAAACGCCATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTG 650872 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 ||| |||| || || || || |||| ||||| || Sbjct 650873 AACGTTCAATCCTATTCCTCCTGCCGATTTCGAAAT 650908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565717835440