Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq397 374 4e-99 >seq397 Length=812 Score = 374 bits (414), Expect = 4e-99 Identities = 380/483 (79%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 57075 TATATTATATCTTCCCATTCGCATCCTGGTTTTCTTTAAGAACTGATACTGCTGTTTGTA 57134 ||||||| || || ||||| || ||||| |||||||||||||||| |||||||||| Sbjct 691 TATATTACATTTTACCATTTAAATTTTGGTTGTCTTTAAGAACTGATATCGCTGTTTGTA 632 Query 57135 ATAATTCTTTATTATCCAGCCATGCCTTGGCCTTTATATTCCCTTCGATATAATCAAGCA 57194 |||||||||| ||||||||||||| || |||||| || ||||| || |||||||||| Sbjct 631 ATAATTCTTTGTTATCCAGCCATGATTTTTTCTTTATGTTTCCTTCAATGTAATCAAGCA 572 Query 57195 ATGTCCTGGTATTGATAGGCCTGCCCTGTTTCGCCACCTCCACTACTGCATCACCCAGGA 57254 |||| |||||||||||||| || |||||||| || || |||||||| ||||| || |||| Sbjct 571 ATGTTCTGGTATTGATAGGTCTTCCCTGTTTTGCTACTTCCACTACAGCATCCCCTAGGA 512 Query 57255 TAATACGAACTTTAGGAAGTTGAGAGGGGAACCACTTTAGGGTATCTTTTGATTTCATTA 57314 |||| | |||| |||||| || | ||||||||||||||||| |||||||||||||| | Sbjct 511 TAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGA 452 Query 57315 AGAAATGTTCCTCAAAATATTGTTAATTTT--TTGATGGTAAGGTAGAGACATTAATTCA 57372 || || ||||| |||||||| || ||||| ||| | || ||| | | | ||||| Sbjct 451 AG--ATATTCCTTAAAATATTATTGATTTTCATTG-CGATATTGTA-TGTC--TGATTCA 398 Query 57373 GGAAATGTTTGTTTTTACTCATCAGTTTTGTCTGGATTATTTGATATGCCTATTCCTACT 57432 | | ||||| || || |||| ||||||||||| ||||| |||||||| || |||| | Sbjct 397 GAATATGTTGACTTATA--CATCGGTTTTGTCTGGGTTATTGGATATGCCAATCCCTAAT 340 Query 57433 TTGATTACAGCATAGCTAAAAATACTGAATATGATAAGCAGGGAAATTATTATCAGTGTA 57492 || |||| |||| |||||||| |||||||||||||| || ||| | ||||||||| | Sbjct 339 TTTATTAGGGCATGACTAAAAATGCTGAATATGATAAGGAGAGAAGTGATTATCAGTATG 280 Query 57493 TTGTCCATATATCCTCAGAAGTA-CATTTTATTATGTAT-ATTGCTTTGACAGTTTTTTA 57550 ||| |||||| |||| ||| || | | | |||| ||| || ||||| | |||||| Sbjct 279 CTGTTCATATAGCCTC-GAATTATTAATGTGTTATATATGATATAGTTGAC-GATTTTTA 222 Query 57551 TCT 57553 ||| Sbjct 221 TCT 219 Score = 374 bits (414), Expect = 4e-99 Identities = 380/483 (79%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 17484 TATATTATATCTTCCCATTCGCATCCTGGTTTTCTTTAAGAACTGATACTGCTGTTTGTA 17543 ||||||| || || ||||| || ||||| |||||||||||||||| |||||||||| Sbjct 691 TATATTACATTTTACCATTTAAATTTTGGTTGTCTTTAAGAACTGATATCGCTGTTTGTA 632 Query 17544 ATAATTCTTTATTATCCAGCCATGCCTTGGCCTTTATATTCCCTTCGATATAATCAAGCA 17603 |||||||||| ||||||||||||| || |||||| || ||||| || |||||||||| Sbjct 631 ATAATTCTTTGTTATCCAGCCATGATTTTTTCTTTATGTTTCCTTCAATGTAATCAAGCA 572 Query 17604 ATGTCCTGGTATTGATAGGCCTGCCCTGTTTCGCCACCTCCACTACTGCATCACCCAGGA 17663 |||| |||||||||||||| || |||||||| || || |||||||| ||||| || |||| Sbjct 571 ATGTTCTGGTATTGATAGGTCTTCCCTGTTTTGCTACTTCCACTACAGCATCCCCTAGGA 512 Query 17664 TAATACGAACTTTAGGAAGTTGAGAGGGGAACCACTTTAGGGTATCTTTTGATTTCATTA 17723 |||| | |||| |||||| || | ||||||||||||||||| |||||||||||||| | Sbjct 511 TAATTCTTACTTCAGGAAGCTGCGCAGGGAACCACTTTAGGGTGTCTTTTGATTTCATGA 452 Query 17724 AGAAATGTTCCTCAAAATATTGTTAATTTT--TTGATGGTAAGGTAGAGACATTAATTCA 17781 || || ||||| |||||||| || ||||| ||| | || ||| | | | ||||| Sbjct 451 AG--ATATTCCTTAAAATATTATTGATTTTCATTG-CGATATTGTA-TGTC--TGATTCA 398 Query 17782 GGAAATGTTTGTTTTTACTCATCAGTTTTGTCTGGATTATTTGATATGCCTATTCCTACT 17841 | | ||||| || || |||| ||||||||||| ||||| |||||||| || |||| | Sbjct 397 GAATATGTTGACTTATA--CATCGGTTTTGTCTGGGTTATTGGATATGCCAATCCCTAAT 340 Query 17842 TTGATTACAGCATAGCTAAAAATACTGAATATGATAAGCAGGGAAATTATTATCAGTGTA 17901 || |||| |||| |||||||| |||||||||||||| || ||| | ||||||||| | Sbjct 339 TTTATTAGGGCATGACTAAAAATGCTGAATATGATAAGGAGAGAAGTGATTATCAGTATG 280 Query 17902 TTGTCCATATATCCTCAGAAGTA-CATTTTATTATGTAT-ATTGCTTTGACAGTTTTTTA 17959 ||| |||||| |||| ||| || | | | |||| ||| || ||||| | |||||| Sbjct 279 CTGTTCATATAGCCTC-GAATTATTAATGTGTTATATATGATATAGTTGAC-GATTTTTA 222 Query 17960 TCT 17962 ||| Sbjct 221 TCT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247473779415016