Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11937 266 6e-69 seq365 203 6e-50 seq960 86.0 1e-14 seq7841 82.4 1e-13 seq15624 78.8 2e-12 seq6585 75.2 2e-11 >seq11937 Length=6370 Score = 266 bits (294), Expect = 6e-69 Identities = 202/237 (85%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACA 123 || |||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 2847 AGCACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGTTTACAGCTTGAATATC 2788 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||||||||||||| | | |||||||||||||||||||||||| | Sbjct 2787 TTAGCATGGAATAATAGAATAGGACTTTAG-TTCTATTTTGTTGGTTTCTAGGACTAGAG 2729 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||| Sbjct 2728 TAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTGATTGTCAGAGGTGAAATTCTTA 2669 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||||| | |||| ||| ||||||| || || |||||||||||||||||||||| Sbjct 2668 GATTTAGCAACGACTGACTTCTGCGAAGGCATTTGCCAAGGATGTTTTCATTAATCA 2612 >seq365 Length=63520 Score = 203 bits (224), Expect = 6e-50 Identities = 216/278 (78%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 44 CTTCACTGGGTGTGCCGG--GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAA 101 |||||||| ||||| || || | | || ||||||||||||||||||||||| | || Sbjct 45971 CTTCACTG--TGTGCTGGTCGGCACTTGAACGTTTACTTTGAAAAAATTAGAGTGCTTAA 45914 Query 102 AGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTAT 160 |||| || || ||| ||||| | | |||||| ||||| ||||||||| | ||| || | Sbjct 45913 AGCAAGCTTTACGCTTGAATATAGT-GCATGGGATAATGGAATAGGACTTT-GGTCCTCT 45856 Query 161 TTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTC 220 |||||||||||| | ||| | ||||||||||| ||| | || |||||| | ||||| Sbjct 45855 TTTGTTGGTTTCGAAGACTGAAGTAATGATTAAGAGGAACAGACGGGGGCATTCGTATTG 45796 Query 221 AATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACC 280 || ||||||||||||||||||| ||||| ||||||||||||||| || || Sbjct 45795 CTGCGTTAGAGGTGAAATTCTTGGATCGTAGCAAGACGAACTACTGCGAAAGCATTTGCC 45736 Query 281 AAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| |||||||||||||||| | ||||||||||| || Sbjct 45735 AAGAATGTTTTCATTAATCA-AGGACGAAAGTTAGAGG 45699 >seq960 Length=44526 Score = 86.0 bits (94), Expect = 1e-14 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAATACATTAGCA 129 || |||| ||||||||||||||||| | |||||| || || | || | || | | | | Sbjct 12574 ACATTTATTTTGAAAAAATTAGAGTAATTAAAGCAAGCTTTAGGCTTCAGTATACT-GAA 12516 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTT-GTTGGTTTCTAGGACCGCCGTAATG 188 || ||| | ||||| || || ||||| |||| ||||||||| | | | | |||| | Sbjct 12515 TGACATAGTGGAATAAGA-GTCAAGTTCTTTTTTTGTTGGTTTCAAAGCCTGGAGTAACG 12457 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||| ||| |||| |||||| | ||||| ||| |||| ||||| ||||| || Sbjct 12456 ATTAAGAGGAATAGACGGGGGCATTCTTATTCTTGTGTTAGAGCTGAAACTCTTGAAT 12399 >seq7841 Length=10710 Score = 82.4 bits (90), Expect = 1e-13 Identities = 76/95 (80%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 || |||||||||||||||| || ||| | |||||||| |||| | |||||||| Sbjct 10368 GTTAGAGGTGAAATTCTTGAATGGTAGCAAGGCAAACTACTGGGAAAACATTCACCAACA 10309 Query 285 ATGTTTTCATTAATCA-GTGAACGAAAGTTAGGGG 318 |||||||||||||||| || ||||||||||| || Sbjct 10308 ATGTTTTCATTAATCACTTGCACGAAAGTTAGAGG 10274 >seq15624 Length=4405 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAATACATTAGCATGGAA 134 || ||||||||||| ||||| | |||||| || || |||| | || | | | |||| | Sbjct 3830 TATTTTGAAAAAATCAGAGTAATTAAAGCAAGCTTTATGCTTCAGTATACT-GAATGGCA 3772 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 |||| ||||| || | |||| ||||||||||||| | | | | |||| |||||| Sbjct 3771 TAATGGAATAAAAC-TCAAATTCTCTTTTGTTGGTTTCAAAGCCTGGAGTAACGATTAAG 3713 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||| |||| ||||| | ||||| ||| | || ||||| ||||| || Sbjct 3712 AGGAATAGAGGGGGGCATTCTTATTCTTGTGTTAAAGCTGAAACTCTTGAAT 3661 >seq6585 Length=12791 Score = 75.2 bits (82), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 235 AAATTCTTGGATTTATTGA-AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||| |||||| || | |||| ||||||||| ||||| || ||||| ||||||||| Sbjct 5348 AAATTTTTGGATC-ATAGCTAGACGAACTACTGCAAAAGCTTTTGCCAAGAATGTTTTCA 5406 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| ||||||||||||| || Sbjct 5407 TTAATCA-AGAACGAAAGTTAGAGG 5430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914627661376