Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq19382 670 0.0 seq11937 170 8e-40 seq365 161 4e-37 >seq19382 Length=3128 Score = 670 bits (742), Expect = 0.0 Identities = 569/692 (82%), Gaps = 33/692 (5%) Strand=Plus/Plus Query 14 GCCTAGCC-GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 |||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1121 GCCTAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 1180 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1181 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 1240 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 1241 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAG 1300 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCAC 251 ||||||||||| |||||||||| | | || | ||| || || ||| || ||||||| Sbjct 1301 GGAAGCGCTTGTGACCAGACTTGGGCCCGGTGGATCATCCAGCGTTCTC-GCTGGTGCAC 1359 Query 252 TCTTCTGCGGTCAGGCCAGCATCAGCTCG-GGCGGTCGGATAAAGGCCCCGGGAATGTGG 310 || | | | ||||||||||||||| ||| |||| ||| |||||| |||||| |||| Sbjct 1360 TCCGCCGGGTTCAGGCCAGCATCAGTTCGCCGCGG-GGGAAAAAGGCTTCGGGAACGTGG 1418 Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370 | || | ||| ||||||||||||| | ||| | | | |||||||||| ||| Sbjct 1419 CTCC--TACGGGAGTGTTATAGCCCGTTGCATAATAC-CCTGGGGCGGACTGAGGTTCGC 1475 Query 371 GCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCG------------------T 412 ||||| || ||||||||||||||||||| | |||| |||| | Sbjct 1476 GCTCC-GCAAGGATGCTGGCGTAATGGTCATCAGCGACCCGTCTTGAAACACGGACCANT 1534 Query 413 CTTGGAACACGGACCAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTG 471 |||| |||||||||||||||||| | || |||||||||||| |||||| |||||| | Sbjct 1535 CTTGAAACACGGACCAAGGAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTAAAACCCCTA 1593 Query 472 CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGA 531 ||||||||||||||||||| ||||| || | || ||| |||||||||||||||| Sbjct 1594 CGCGTAATGAAAGTGAACGCAGGTGAGA----GCTTCGGCGCATCATCGACCGATCCTGA 1649 Query 532 TGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTAT 591 ||| ||||||||||||||||||||||||| | |||||||||||| |||||||||| Sbjct 1650 TGTTCTCGGATGGATTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTAT 1709 Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| Sbjct 1710 GCCTGTATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGC 1769 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||| |||| || ||||||| Sbjct 1770 AAATCGATCGTCAAATATGGGCATGGGGGCGA 1801 >seq11937 Length=6370 Score = 170 bits (188), Expect = 8e-40 Identities = 136/164 (83%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||||||||||||||| | ||| ||| |||||||| | || || |||||| Sbjct 693 GAGTCGGATTGTTTGGGAATGCAATCCAAAACGGGTGGTAAATTCCATCCAAGACTAAAT 634 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| || |||||||||||||| ||||||| |||| ||||||||||||||||| || | Sbjct 633 ATTAGCAAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTCTGAAG 574 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||||||| ||| || ||||||||||| |||||||||| |||||| Sbjct 573 AGAGAGTGAAATAGTACGTGAAATTGCTGAAAGGGAAACGCTTG 530 Score = 147 bits (162), Expect = 9e-33 Identities = 188/257 (73%), Gaps = 13/257 (5%) Strand=Plus/Minus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||| || || | ||| || ||| || ||||||||| ||||||||||||||||| ||| Sbjct 254 AGGTTGTTGACAAAATTGTCTTAATCGACCCGTCTTGAAACACGGACCAAGGAGTGCAAC 195 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 | ||||||||| | ||||| |||||| | ||| ||||||||| || |||| || Sbjct 194 AAATATGCGAGTCGTAGGGTGACAAACCTGAAGGCGCAATGAAAGTAAAA--AGGTAAGA 137 Query 500 A------CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT----CGGATGGATTTG 549 | | || | |||| | || ||| | || | ||| | | || | || Sbjct 136 AGGTGCTCTCGGGTACCTGCATTACCGCCCGGCCTTGCAG-CTTAATGCTAAAGGGTCTG 78 Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 || |||||||| || || ||||||||||||||||||||||||||| |||||| ||||| Sbjct 77 AGGTAGAGCATATTTGCTGCGACCCGAAAGATGGTGAACTATGCCTGCATAGGGCGAAGC 18 Query 610 CAGAGGAAACTCTGGTG 626 ||||||||||||||||| Sbjct 17 CAGAGGAAACTCTGGTG 1 >seq365 Length=63520 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||||| ||||||||||||||||||||||| ||| || |||||||||| Sbjct 40802 GAGCAGACATGTTGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAACGAAGCCAGAG 40743 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| ||| |||||||||| |||||||||||||||||| | ||| ||| Sbjct 40742 GAAACTCTGGTGGAGGTTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAGACTTGAGTA 40683 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 40682 TAGGGGCGA 40674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078658581350