Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq12543 609 6e-172 seq11573 289 7e-76 seq26948 105 2e-20 >seq12543 Length=5972 Score = 609 bits (674), Expect = 6e-172 Identities = 379/407 (93%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 TACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 882 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| Sbjct 883 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTGCTAAGACCGATGT 942 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| |||||| ||||||| | ||||||| || |||| Sbjct 943 GAAATCCCCGGGCTCAACCTGGGAACTGCATTGGTGACTGGCAGGCTAGAGTATGGCAGA 1002 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||| Sbjct 1003 GGGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCGATGG 1062 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1063 CGAAGGCAGCCCCCTGGGCCAATACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 1122 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 1123 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGGATTCATT 1182 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1183 TCCTTAGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 1229 >seq11573 Length=6636 Score = 289 bits (320), Expect = 7e-76 Identities = 270/343 (79%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1614 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 1673 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| || || |||||| | |||||| ||| |||||||| | Sbjct 1674 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGTCAGTGGTGAAATCTC 1733 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| | || ||| ||| |||||| | || |||||| || | | || Sbjct 1734 ACAGCTTAACTGTGAAACTGCCATTGATACTGCAGGTCTTGAGTGTTGTTGAAGTAGCTG 1793 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 |||| ||||||| ||||||||| ||||||| |||||||||| ||||||||| Sbjct 1794 GAATAAGTAGTGTAGCGGTGAAATGCATAGATATTACTTAGAACACCAATTGCGAAGGCA 1853 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | || | | ||||||||| ||| ||||||||||||||||| ||||||||||||| Sbjct 1854 GGTTACTAAGCAACAACTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGAT 1913 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG 353 |||||||||||||||||| |||||||| |||| ||| |||| Sbjct 1914 ACCCTGGTAGTCCACGCCGTAAACGATGCTAACTCGTTTTTGG 1956 >seq26948 Length=2140 Score = 105 bits (116), Expect = 2e-20 Identities = 217/318 (68%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 20 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 79 ||||| || |||||||||||||||||||||||| || || ||||| | || || Sbjct 1003 CCGGCAAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAGCGTGAGTCATAAGA 1062 Query 80 ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAA 139 | | ||||||||| || ||||||| ||||| || || ||| | ||| Sbjct 1063 ATTTGGCGTAAAGAGTAAATAGGCGGTA---TAAGAAAGATG--AAA-----GAAATTAT 1112 Query 140 CCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCAC 199 | |||| ||| || | |||||||| | ||| | || ||||| | Sbjct 1113 TATT--AATT---TTT---ACATGA--ACTAGAGTAAAATAAAGGAGAGTAGAATTGAAA 1162 Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||||| |||||| | |||| | ||||| | |||| |||||||| | | || | Sbjct 1163 GTGTAAGGATGAAATCTAGAAATATTTTCAGGAATATCAATAGCGAAGGCCACTCTCTTG 1222 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | | ||||||||| | ||||||| ||||| ||||||| |||||||| |||| |||| Sbjct 1223 GTTTTTACTGACGCTGAATTACGAAAGTGTGGGTAGCAAACGGGATTAGAGACCCCGGTA 1282 Query 320 GTCCACGCCCTAAACGAT 337 |||||| ||||||||||| Sbjct 1283 GTCCACACCCTAAACGAT 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288793522848