Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq12543 443 5e-122 seq11573 230 6e-58 seq29400 86.0 2e-14 >seq12543 Length=5972 Score = 443 bits (490), Expect = 5e-122 Identities = 351/417 (84%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||| ||||| | ||||| ||| |||||||||||| |||||||| Sbjct 4464 CGCGGGTAGATTGCATCATCACAAACACTTCAACTTCGCTGAGTCTCGGGAGGAGACAGT 4405 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4404 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4345 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||| |||| ||||||||||| || Sbjct 4344 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGACTTCAATCAAGAGCTT-GC---- 4290 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4289 ----ACCCCATCATTTAATCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 4234 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || || | || | | Sbjct 4233 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACC-AGTTTATTGCAAC 4175 Query 301 GGCATGA-GCTTACGGAGCAAGTCCTTCACCCT-CACCGGCGCACCTTCTCCCGAAGTTA 358 | | | ||| || || || | ||| || || |||| ||||| ||||||||||| Sbjct 4174 CCCTTCACCCTTCTGGCGCGAGCCAGTCAAGCTACAAGGGCGTACCTTATCCCGAAGTTA 4115 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| || |||||| ||||||||| |||||||||||||||||||||| | || ||| Sbjct 4114 CGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 4058 >seq11573 Length=6636 Score = 230 bits (254), Expect = 6e-58 Identities = 320/454 (70%), Gaps = 55/454 (12%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| | | | ||||||||| ||| |||| || ||||||| Sbjct 5211 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCGTGGCTGAGACAGT 5153 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5152 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 5093 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACC--------------------------- 153 ||||||||||||| |||||||||||||||||| Sbjct 5092 TTAGGACCGTTATAGTTACGGCCGCCGTTTACNNNGTTATAGTTACGGCCGCCGTTTACT 5033 Query 154 GGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGG 213 |||||||| | || |||||| | ||||| | | | |||||||||| |||||||| Sbjct 5032 GGGGCTTCAGTTAATGCCTTCGCTTACGCTAAGCACCTTCCTTAACCTTCCAGCACCGGG 4973 Query 214 CAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAAC 273 |||| |||| ||||||||| | |||||| || ||||||| |||||||||| |||||| Sbjct 4972 CAGGTGTCAGACCCTATACAGCATCTTTCGATTTAGCAGAGTCCTGTGTTTTTGATAAAC 4913 Query 274 AGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTC 333 |||||| ||||| | || || || ||| ||| || Sbjct 4912 AGTCGCCTGGGCCTCTTCACTGCGGCCAACAT-TGCT----------GT----------- 4875 Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTT-CCCCCGAGTT 392 |||| ||||| ||||||||||| | |||||||||||||||| || ||| | Sbjct 4874 --TGGCGTCTCTTCTTCCGAAGTTACGAGACTATTTTGCCTAGTTCCTTAGCCACGA-CT 4818 Query 393 CTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | ||| ||| |||| | ||||||| | | ||||| Sbjct 4817 CACTCGAGCACCTTAGGATTCTCTCCTCGACCAC 4784 >seq29400 Length=1612 Score = 86.0 bits (94), Expect = 2e-14 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||| ||| | | ||||||||||||| ||| || ||| || | ||| || Sbjct 593 GCATCTGCACGGATAATTCAATTTCACTGGGTCCATCTTGTAGAAAGTAGAGGGATCATT 534 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | | ||||| |||||| | | ||| | | ||||||||||||||||||||||| ||| Sbjct 533 ATGTCATTCATGCAGGACTACAATTATTAGTCTAGGAATTTCGCTACCTTAGGACCCTTA 474 Query 133 TTGTTACGGCCGCCGTTTAC 152 | |||| ||||| ||||||| Sbjct 473 TGGTTAAGGCCGTCGTTTAC 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260011533504