Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq11573 306 8e-81 seq12543 201 2e-49 seq29400 73.4 8e-11 >seq11573 Length=6636 Score = 306 bits (338), Expect = 8e-81 Identities = 293/378 (78%), Gaps = 32/378 (8%) Strand=Plus/Minus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| | | |||||||||||||| |||| Sbjct 5202 CGGCATCTTCACCGATACTACAATTTCACCGAGCTCGTGGCTGAGACAGTGCCCAGATCG 5143 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5142 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 5083 Query 125 TATAGTTACGGCCGCCGTTTAC---------------------------TGGGGCTTAAG 157 |||||||||||||||||||||| |||||||| || Sbjct 5082 TATAGTTACGGCCGCCGTTTACNNNGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAG 5023 Query 158 TTCACTGCTTCGATTGCTCTAA-CAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCA 216 || | ||||| || | |||| || | || ||||||||||||||||||||||| |||| Sbjct 5022 TTAATGCCTTCGCTTACGCTAAGCACCTTCC-TTAACCTTCCAGCACCGGGCAGGTGTCA 4964 Query 217 GCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTG 276 | |||||||| | |||| ||| |||||||| |||||||||||| ||||||||||| || Sbjct 4963 GACCCTATACAGCATCTTTCGATTTAGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTG 4904 Query 277 GGCCTATTCTCTGCGGCCTGTCATAG--ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 ||||| ||| |||||||| ||| | ||| | ||||| || |||||||| | Sbjct 4903 GGCCTCTTCACTGCGGCC-AACATTGCTGTTGGCGTCTCTTCTTCCGAAGTTACGAGACT 4845 Query 335 ATTTTGCCGAGTTCCTTA 352 |||||||| ||||||||| Sbjct 4844 ATTTTGCCTAGTTCCTTA 4827 >seq12543 Length=5972 Score = 201 bits (222), Expect = 2e-49 Identities = 206/267 (77%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| | | ||| ||| | |||||| | ||||||||| |||||| Sbjct 4452 GCATCATCACAAACACTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 4393 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4392 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4333 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||| ||| ||| | | | || |||| | | || | Sbjct 4332 TAGTTACGGCCGCCGTTTACCGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 4282 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| ||||||||||||||||| ||||||| || ||| || || |||| Sbjct 4281 ATTTAATCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 4222 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 4221 AGTGCTGTGTTTTTATTAAACAGTCGC 4195 >seq29400 Length=1612 Score = 73.4 bits (80), Expect = 8e-11 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | | | ||||||||| | ||| || | ||| ||| ||| || Sbjct 593 GCATCTGCACGGATAATTCAATTTCACTGGGTCCATCTTGTAGAAAGTAGAGGGATCATT 534 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | | | ||| ||| || | | ||| | | ||||||||||||||||||||||| ||| Sbjct 533 ATGTCATTCATGCAGGACTACAATTATTAGTCTAGGAATTTCGCTACCTTAGGACCCTTA 474 Query 127 TAGTTACGGCCGCCGTTTAC 146 | |||| ||||| ||||||| Sbjct 473 TGGTTAAGGCCGTCGTTTAC 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061735606912