Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq12543 363 3e-98 seq11573 201 2e-49 seq26948 98.7 2e-18 >seq12543 Length=5972 Score = 363 bits (402), Expect = 3e-98 Identities = 286/338 (85%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 770 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGCTTTCGCCC 713 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 712 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 653 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||||||||| ||| ||||||||||||||| ||| ||||| || Sbjct 652 TGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCCA 593 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| | | | ||| | | ||||||| |||||||||||||||| |||| Sbjct 592 CCAACTAGCTAATCAGCCATCGGCCAACCCTATAGCGCGAGGCCCGAAGGTCCCCCGCTT 533 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCG--TTTCCGAACGTTATCCCCCACTACC 298 || |||||| |||||||||||||| |||| |||| | ||||||||||||| Sbjct 532 TCATCCGTAGATCGTATGCGGTATTA--ATCCGGCTTTCGCCGGGCTATCCCCCACTACA 475 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | || |||| | | ||||||||||||| |||| ||| Sbjct 474 GGACATGTTCCGATGTATTACTCACCCGTTCGCCACTC 437 >seq11573 Length=6636 Score = 201 bits (222), Expect = 2e-49 Identities = 145/166 (87%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || |||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct 1531 CACGCGGGAT-GGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTC 1473 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||| |||||||| || | Sbjct 1472 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCT 1413 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||||| | ||||||||||| ||||||||||||||| |||||| Sbjct 1412 AAAGATCGTAGACTTGGTGAGCCGTTACCTCACCAACTATCTAATC 1367 >seq26948 Length=2140 Score = 98.7 bits (108), Expect = 2e-18 Identities = 98/125 (78%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 38 TTGGCTGGATCAGGCTTTC-GCCCATTGTCCAATATTCCCCACTGCTGCC--TCCCGTAG 94 ||| ||||||| |||||| || |||||||||||||||||||||||||| | | | Sbjct 932 TTGACTGGATCCAGCTTTCTGCTGATTGTCCAATATTCCCCACTGCTGCCAATACTCTGA 873 Query 95 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGAT 154 || ||| || | | ||||||||| ||||||||| |||||| ||||| ||| || |||| Sbjct 872 TTGTGTGGTCCTTATTTCAGTTCCACTGTGACTGACCATCCTTTCAGATCAGCTAAGGAT 813 Query 155 CGTCG 159 | ||| Sbjct 812 CATCG 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071329603360