Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq12543 356 8e-96 seq11573 327 4e-87 seq11937 82.4 3e-13 >seq12543 Length=5972 Score = 356 bits (394), Expect = 8e-96 Identities = 418/554 (75%), Gaps = 26/554 (5%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGG--TAAGCTTG--TGGGCCCCCTAGACCATC-CA 106 ||| |||||||||||| | || ||| ||| || | | ||||| | ||||| || Sbjct 3358 CGGTATTCGGAGTTTGCT--ATGGCGGGGTAATCTGCAATAGACCCCCCA-ACCATGACA 3302 Query 107 GTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 |||||||||| ||| | || ||||| | | || |||||||| |||||| |||||| Sbjct 3301 GTGCTCTACCCCCGAAGGTGAGACACGAGGCACT--ACCTAAATAGTTTTCGGAGAGAAC 3244 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||||| || ||||||||||||||||||||| ||||||||| | |||| Sbjct 3243 CAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTT 3184 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | ||||||||||| |||||| || ||||| ||||| |||| |||||||| Sbjct 3183 CAACGTTAGTGGGTTCGGACCTCCAGTACGTGTTACCGCACCTTCATCCTGGCCATGGAT 3124 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | | ||||||||| | || ||| | ||||||||||||||||||||||| Sbjct 3123 AGATCACCTGGTTTCGGGTCTACGCCCAGCAACTGA-ACGCCCTATTCGGACTCGCTTTC 3065 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 |||||| || ||| | || |||||| || || || |||| || |||| | | |||| | Sbjct 3064 GCTACGCCTGCCCTATAC-GGTTAAGCTTGCTACTGAACG-TAAGTCGCTGACCCATTAT 3007 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| ||||||||||| | || || |||||||| | ||||| || Sbjct 3006 ACAAAAGGTACGCCGTCACC----CCTTACGAG--------GCTCCGACTGTTTGTATGC 2959 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| Sbjct 2958 ATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGG 2899 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| || | ||||||||| | |||||||||| ||| || ||||||| ||| || Sbjct 2898 TACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCATCTT 2839 Query 586 CACACGAAATTTCA 599 || || |||||| Sbjct 2838 CAGACAGGATTTCA 2825 >seq11573 Length=6636 Score = 327 bits (362), Expect = 4e-87 Identities = 359/473 (76%), Gaps = 21/473 (4%) Strand=Plus/Minus Query 133 CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTT 192 |||||||||||||||||||||||||| ||| || ||||||| | ||||||||||||||| Sbjct 4076 CGACGCTGCACCTAAATGCATTTCGGAGAGTACGAGCTATCTCCCAGTTTGATTGGCCTT 4017 Query 193 TCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG 252 ||||||||| ||||||||||||| | |||||||| | | ||||||||||||||| Sbjct 4016 TCACCCCTACCCACAGGTCATCCGAAGACTTTTCAACGTCAACCGGTTCGGTCCTCCACT 3957 Query 253 CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG 312 | || ||||| | |||||||||||||||||| |||||||| | |||| ||| | ||| Sbjct 3956 CTGTGTTACCAGAGCTTCAACCTGCCCATGGGTAGATCACAAGGTTTCGCGTC-TAATCC 3898 Query 313 TGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC---ACGGGTTA 369 | | | || |||||||||| |||||||||||||| ||||| | || | ||| Sbjct 3897 TACTAACTATGCGCCCTATTCAGACTCGCTTTCGCTCCGGCTCCGGTACTTAATACCTTA 3838 Query 370 ACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||||||| | || |||||| ||||||||| | |||||||||||||||||| Sbjct 3837 ACCTCGCTA-GTAAAATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCAC----- 3784 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | | | |||||||| | |||||||| | |||||||||| |||||||| Sbjct 3783 AGCATTACG------CTGCTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTATTTCA- 3731 Query 490 TCCCCGCCA---GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCAC 546 ||| | | | || |||||||||||||| |||| |||||||| | ||||||||| Sbjct 3730 -CCCTTCTATTCGAAGTGCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCTT 3672 Query 547 CAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| || ||||||| ||| ||||| || |||||| Sbjct 3671 TCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCA 3619 >seq11937 Length=6370 Score = 82.4 bits (90), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTC-CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||| |||||||||||||| | | || | || ||||||| |||||||||||||||||| Sbjct 551 TTTCACGTACTATTTCACTCTCTCTTCA-GAGTGCTTTTCATCTTTCCCTCACGGTACTT 609 Query 531 GTCCGCTATCGGTC 544 || ||||||||||| Sbjct 610 GTTCGCTATCGGTC 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816463327488