Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq12543 430 3e-118 seq11573 275 2e-71 seq11937 82.4 2e-13 >seq12543 Length=5972 Score = 430 bits (476), Expect = 3e-118 Identities = 353/415 (85%), Gaps = 12/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| ||||||| |||||||| | Sbjct 3211 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGACCTCCAGTACG 3154 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| |||| ||||||||| || ||||| |||||||| | Sbjct 3153 T-GTTACCGCACCTT-CATCCTGGCCAT-GGATAGATCACCTGGTTT-CGGGTCTACG-C 3099 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| ||| |||||||| | |||||||||| |||||||||| |||||| |||||||| Sbjct 3098 CCAGCAACTGAACGCCCTATTCGGACTCGCTTT-CGCTACGCCTGCCCTATACGGTTAAG 3040 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 3039 CTT-GCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCC--CTT 2983 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | |||||| |||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 2982 ACGAGGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 2924 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| Sbjct 2923 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAG 2864 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 2863 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 2809 >seq11573 Length=6636 Score = 275 bits (304), Expect = 2e-71 Identities = 318/415 (77%), Gaps = 14/415 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| | || ||| Sbjct 4006 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTCTGT-GTT 3950 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| |||||||||||| || |||||| | ||||| || ||||| | || | Sbjct 3949 ACCAGAGCTT-CAACCTGCCCATGGG-TAGATCACAAGGTTT-CGCGTCTAAT-CCTACT 3894 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAAGC 184 |||| ||||||| | ||||||||||| |||| || |||| | || | |||| | Sbjct 3893 AACTATGCGCCCTATTCAGACTCGCTTT-CGCTCCGGCTCCGGTACTTAATACCTTAACC 3835 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | || | | ||| ||| ||| | | |||||| ||||||| |||| ||||| | | Sbjct 3834 TC-GCTAGTAAAATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACAGCATTAC 3776 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | | |||| || ||||||| || |||||||||||| |||||||||| | || | || Sbjct 3775 GCTG-CTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTATTTCACCCTTCTATTCGAA 3717 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||| |||| ||||| |||||||||||||| |||| |||||||||| Sbjct 3716 GTGCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGC 3657 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||||||| |||| |||| ||| ||||||| Sbjct 3656 CTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCACGTGTCCCGCCCTACTC 3602 >seq11937 Length=6370 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||| | ||||||||||| | ||| | | || |||||| ||||||||||||||||| Sbjct 551 TTTCACGTACTATTTCACTCTC-TCTTCAGAGTGCTTTTCATCTTTCCCTCACGGTACTT 609 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||| ||||||||| | || ||||||| |||||| Sbjct 610 GTTCGCTATCGGTCTCTTGCTAATATTTAGTCTTGGA 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240823540608