Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq11573 297 3e-78 seq12543 271 1e-70 seq29400 120 5e-25 >seq11573 Length=6636 Score = 297 bits (328), Expect = 3e-78 Identities = 230/274 (84%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| |||| |||| ||||| |||||| ||||||||| ||||| | ||| Sbjct 5927 GAGGCGAGTTTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAG 5868 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||| ||||||||| | |||||||||||||| || |||||||||||||| Sbjct 5867 CGGTGCACCTGGCGGTACAACTGATACACCAGAGGTTTGTTCAATTCGGTCCTCTCGTAC 5808 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || || ||||||||| || |||||| | | ||||| |||||||||||||| | Sbjct 5807 TAGAATCAAGCCCTCTCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCAC 5748 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5747 GACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACC 5688 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 5687 TTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 5654 >seq12543 Length=5972 Score = 271 bits (300), Expect = 1e-70 Identities = 224/273 (82%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| | | ||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| || Sbjct 5189 AGGCGAGTTTCCCGCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACATAGCTACCCGGC 5130 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 |||| |||| ||||| ||| ||||||||||| ||||| |||||||||||||||| Sbjct 5129 GATGCCACTGGCGTGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACT 5070 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | | |||| || |||||| ||| ||||||||| | |||||||||| ||||||||| || Sbjct 5069 AGGAGCAGCCCCCTTCAAATATCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACG 5010 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| | |||||||||| ||| ||||||||| ||||||||||| |||||||||||| Sbjct 5009 ACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCG 4950 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||||||||||||| |||||||||||| Sbjct 4949 GCTACAGCCCCAGGATGAGATGAGCCGACATCG 4917 >seq29400 Length=1612 Score = 120 bits (132), Expect = 5e-25 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| | |||||||| | | |||||| |||||||||| ||| || | ||||||| | Sbjct 1154 GATAGAGTCCGAACTGATTTACATCGTTCTAAACCCAGCTCACGTACCGCCTTAATGGAC 1095 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| ||||||||||||| || ||||| |||||||||| || |||||||||||| Sbjct 1094 GAACAGTCCAACCCTTGGGAGCTTCTTCACCCCCAGGATGCGATGAGCCGACATCG 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780326970132