Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq12543 401 2e-109 seq11573 194 4e-47 seq26948 78.8 2e-12 >seq12543 Length=5972 Score = 401 bits (444), Expect = 2e-109 Identities = 343/417 (82%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||| Sbjct 773 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGCTTTCGCC 714 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 713 CATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 654 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||||||| ||||||||||||||||| ||||||||||| ||| |||| ||||||| Sbjct 653 GTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCTTTACCCC 594 Query 181 GCCAACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCT 238 |||||||||||||| ||||| || | || |||| | |||||||||||||||||| Sbjct 593 ACCAACTAGCTAATCAGCCATC--GGCCAACCCTATAGCGCGAGGCCCGAAGGTCCCCCG 536 Query 239 CTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCAT 298 |||| || || |||||||||||| | |||| || |||||||| | | Sbjct 535 CTTTCATCCGTAGATCGTATGCGGTATTAATCCGGCTTTCGCCGGGCTATCCCCCACTA- 477 Query 299 CAGG-CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTG 357 |||| || |||| | ||||||||||||| ||||||||| || | || |||||| Sbjct 476 CAGGACATGTTCCGATGTATTACTCACCCGTTCGCCACTCGCCACC--AGGTGCAAGCAC 419 Query 358 CTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | || | ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 418 C--CGTGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 364 >seq11573 Length=6636 Score = 194 bits (214), Expect = 4e-47 Identities = 159/192 (83%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| || || || | ||||||| ||||||| |||||||| | ||||| Sbjct 1558 TTTACAACCCATAGGGCCGTCGTCCTTCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 1499 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 1498 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 1439 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| || ||| |||||| | || |||| ||| ||||| | || Sbjct 1438 TGGGGGATCACCCTCTCAGGCCCCCTAAAGATCGTAGACTTGGTGAGCCGTTACCTCACC 1379 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 1378 AACTATCTAATC 1367 >seq26948 Length=2140 Score = 78.8 bits (86), Expect = 2e-12 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 40 TGGCTGCATCAGGCTTGC-GCCCATTGTGCAATATTCCCCACTGCTGCC--TCCCGTAGG 96 || ||| ||| |||| | || ||||| |||||||||||||||||||| | | | Sbjct 931 TGACTGGATCCAGCTTTCTGCTGATTGTCCAATATTCCCCACTGCTGCCAATACTCTGAT 872 Query 97 AGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 || ||| || | | ||||||||| |||| ||| |||||| ||||| |||||| ||||| Sbjct 871 TGTGTGGTCCTTATTTCAGTTCCACTGTGACTGACCATCCTTTCAGATCAGCTAAGGATC 812 Query 157 GTCG 160 ||| Sbjct 811 ATCG 808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221635547712