Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq12543 338 2e-90 seq11573 297 6e-78 >seq12543 Length=5972 Score = 338 bits (374), Expect = 2e-90 Identities = 289/359 (81%), Gaps = 26/359 (7%) Strand=Plus/Plus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||| ||||| ||| |||||||||||||||||||||| | ||||| Sbjct 577 CTGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCAGTAGCTGGTCTGAG 636 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| || | |||||| ||| |||||||||||| ||| |||||||||||||||||||||| Sbjct 637 AGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTG 696 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| ||| ||||||||| |||||||||| |||||| |||||||| | || ||||||| Sbjct 697 GGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGTGTGAAGAAGGCC 756 Query 345 TTCGGGTCGTAAAGC---TCTGTCCTCAAGGAA------------GATA----------A 379 ||||||| ||||||| | ||||| || ||| ||| | Sbjct 757 TTCGGGTTGTAAAGCACTTTTGTCCGGAAAGAAATCCTTGGCTCTAATACAGTCGGGGGA 816 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||||||||| || || |||| ||||||||||||||||||||||||||||||||||||| Sbjct 817 TGACGGTACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 876 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 ||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||| |||| Sbjct 877 GGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTTTGCTAAG 934 >seq11573 Length=6636 Score = 297 bits (328), Expect = 6e-78 Identities = 371/504 (74%), Gaps = 30/504 (6%) Strand=Plus/Plus Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80 ||||||||| ||||||| | ||| |||| | |||||||| | | ||||| | | Sbjct 1222 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCTGGGGGATAGCCTTT 1281 Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATC-AAAGCT 139 ||||||| | |||||| |||||||||| || |||| | |||| ||| || Sbjct 1282 CGAAAGGAAGATTAATACCCCATAATATACTGG-ATGGCATCATTCG-GTATTGAAAACT 1339 Query 140 CCGGCGGTACAG-GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198 |||| || | || ||| | | |||| |||||| |||||||| ||||||||||| |||| Sbjct 1340 CCGGTGG-ATAGAGATGGGCACGCGCAAGATTAGATAGTTGGTGAGGTAACGGCTCACCA 1398 Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258 || | |||||| ||| | ||||||||||||||| ||||| ||| |||||||||||| Sbjct 1399 AGTCTACGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGA 1458 Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 ||| |||||||||||||||||||||| ||||||||| |||||||| | |||||||| || Sbjct 1459 CCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGGACAATGGGTGAGAGCCTGATCCA 1518 Query 319 GCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 || | |||||||| || || || ||| |||| ||||| ||| | | ||| ||| Sbjct 1519 GCCATCCCGCGTGAAGGACGACGGCCCTATGGGTTGTAAACTTCTTTTGTATAGG--GAT 1576 Query 378 AA---------------------TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGT 416 || ||| |||||| | || |||| |||||||||| ||| Sbjct 1577 AAACCTACCCTCGTGAGGGTAGCTGAAGGTACTATACGAATAAGCACCGGCTAACTCCGT 1636 Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 ||||||||||||||||||||| |||| || ||||||||||||| ||| | ||| ||||| Sbjct 1637 GCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCGGATTTA-TTGGGTTTAAAG 1695 Query 477 GGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||| || | |||||| Sbjct 1696 GGTCCGTAGGCGGATCTGTAAGTC 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496663445888