Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq12543 324 3e-86 seq11573 289 7e-76 seq26948 105 2e-20 >seq12543 Length=5972 Score = 324 bits (358), Expect = 3e-86 Identities = 280/344 (81%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 835 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 894 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| ||||| |||| | || |||||| | || Sbjct 895 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTGCTAAGACCGATGTGAAATCCCCGGG 954 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT---GCAGGAGGGGCAAGTGG 189 ||||||| || ||||| || | |||| ||||||||| ||| |||||| || | Sbjct 955 CTCAACCTGGGAACTGCATTGGTGACTGGCAGGCTAGAGTATGGCA-GAGGGG--GGTAG 1011 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| ||||||| |||||||||||||| || ||||||| ||| |||||||||| | Sbjct 1012 AATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCGATGGCGAAGGCAG 1071 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 | |||| | |||||| || | || ||||||||||||||||||||||||||||||| Sbjct 1072 CCCCCTGGGCCAATACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 1131 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGG 353 ||||||||||||||||| ||||||||| ||||| ||| |||| Sbjct 1132 CCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGG 1175 >seq11573 Length=6636 Score = 289 bits (320), Expect = 7e-76 Identities = 303/396 (77%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 1618 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 1677 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| |||||| || | |||||||| ||||||| | | Sbjct 1678 GATTTATTGGGTTTAAAGGGTCCGTAGGCGGATCTGTAAGTCAGTGGTGAAATCTCACAG 1737 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| | ||||| |||| |||||||| || ||||| | | | | |||||| Sbjct 1738 CTTAACTGTGAAACTGCCATTGATACTGCAGGTCTTGAGTGTTGTTGAAGTAGCTGGAAT 1797 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||||||||||||||||||| ||||||||| |||||||| | |||||||| | || Sbjct 1798 AAGTAGTGTAGCGGTGAAATGCATAGATATTACTTAGAACACCAATTGCGAAGGCAGGTT 1857 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 || | ||||||| |||| | |||||||||||||||| ||||||||||||||||| Sbjct 1858 ACTAAGCAACAACTGACGCTGATGGACGAAAGCGTGGGGAGCGAACAGGATTAGATACCC 1917 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||||||| ||| | | | || | ||||| | | | | Sbjct 1918 TGGTAGTCCACGCCGTAAACGATGCTAACTCGTTTTTGGAATG--TAAGT--TTCAGAGA 1973 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || | |||||| |||||||||||||| Sbjct 1974 CTAAGCGAAAGTGATAAGTTAGCCACCTGGGGAGTA 2009 >seq26948 Length=2140 Score = 105 bits (116), Expect = 2e-20 Identities = 221/326 (68%), Gaps = 20/326 (6%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 || |||||| || |||||||||||||||||||||||| ||||| ||||| | | Sbjct 999 AGTCCCGGCAAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAGCGTGAGTCAT 1058 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGC 133 || | | ||||||||| || |||| ||| | ||| ||| |||||| || Sbjct 1059 AAGAATTTGGCGTAAAGAGTAAATAGGCGGTAT---AAGAAAGA--TGAAAGAA-ATTAT 1112 Query 134 TCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATT 193 | | | |||| | | || | ||||||| | | || ||| ||||| Sbjct 1113 T----------ATTAATTTTTACA-TGAA---CTAGAGTAAAATAAAGGAGAGTAGAATT 1158 Query 194 CCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTG 253 |||||| | |||||| | ||||| ||||| | || | |||||||| || Sbjct 1159 GAAAGTGTAAGGATGAAATCTAGAAATATTTTCAGGAATATCAATAGCGAAGGCCACTCT 1218 Query 254 CTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 313 || | | | |||||| |||| |||||| ||||| ||||||| |||||||| |||| Sbjct 1219 CTTGGTTTTTACTGACGCTGAATTACGAAAGTGTGGGTAGCAAACGGGATTAGAGACCCC 1278 Query 314 GGTAGTCCACGCCGTAAACGATGAAT 339 |||||||||| || |||||||||||| Sbjct 1279 GGTAGTCCACACCCTAAACGATGAAT 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202447554816