Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq12543 477 3e-132 seq11573 389 1e-105 seq34962 80.6 9e-13 >seq12543 Length=5972 Score = 477 bits (528), Expect = 3e-132 Identities = 430/529 (81%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| |||| |||||| ||||||||||||||| |||||||| |||| Sbjct 3070 CGAGTCCGAATAGGGCGTTCAGTTGCTGGGCGTAGACCCGAAACCAGGTGATCTATCCAT 3129 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 3130 GGCCAGGATGAAGGTGCGGTAACACGTACTGGAGGTCCGAACCCACTAACGTTGAAAAGT 3189 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 3190 TAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTCTC 3249 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||| Sbjct 3250 TCCGAAAACTATTTAGGTAGTGCCTCGTGTCTCACCTTCGGGGGTAGAGCACTGTCATGG 3309 Query 241 CTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 | ||||||| ||||| ||||| |||| ||||||||||||| | | ||| | Sbjct 3310 TTGGGGGGTCTATTGCAGATTACCCCGCCATAGCAAACTCCGAATACCGAAGAGTGCAAT 3369 Query 300 CGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 3370 CACGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCG 3428 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| |||| | |||||||| | |||||||| || ||||| |||| Sbjct 3429 CCAGCTAAGGTCCCCAAAT-ATAGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAAACAG 3485 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 3486 TCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCG 3544 Query 479 AGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGC 526 || ||| ||| ||| || | |||| |||| | | ||||||||| Sbjct 3545 AGTCGTCCTGCGCGGAAGATGTAACGGG-GCTAAGCTATATACCGAAGC 3592 >seq11573 Length=6636 Score = 389 bits (430), Expect = 1e-105 Identities = 421/549 (77%), Gaps = 17/549 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| | || ||||| ||||||| ||||||||||||| Sbjct 3870 CGAGTCTGAATAGGGCGCATAGTTAGTAGGATTAGACGCGAAACCTTGTGATCTACCCAT 3929 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||| | |||||||| |||||| ||||||| | | |||||||| | Sbjct 3930 GGGCAGGTTGAAGCTCTGGTAACACAGAGTGGAGGACCGAACCGGTTGACGTTGAAAAGT 3989 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||| ||||||||||||||||||||| || |||||| ||| |||||| || ||| Sbjct 3990 CTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTGGGAGATAGCTCGTACTC 4049 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC--ATCGGGGGTAGAGC-ACTGTTA 237 ||||||| |||||||| || || ||| | || | |||||||| |||| | Sbjct 4050 TCCGAAATGCATTTAGGTGCAGCGTCGTATATAAGTTTATTAGAGGTAGAGCTACTGAT- 4108 Query 238 TGGCTAGGGGG---TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT 294 ||| | |||| |||| || |||||| | | |||||||||||||| || | | Sbjct 4109 TGGATGCGGGGGTTTCATCGCC---TACCAATTCCTGACAAACTCCGAATGCTAATAAAT 4165 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || | ||| ||||||||||||||||||||||||| || |||||||| ||||| || | Sbjct 4166 GTT-CTACGGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACCCAG 4224 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || | ||||||||| ||| |||| | |||||| || |||| || || ||| | Sbjct 4225 ACCAACAGCTAAGGTCCCAAAATATATGTTAAGTTGAAGCAACGCGGTTGGACTGCATTG 4284 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4285 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 4344 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 |||||| ||| ||| ||||||||||||||| || || | | ||||||||| ||| Sbjct 4345 GTCGAGCGGTCCGGCATGGATAATAATCGGGCATAAACATAT-TACCGAAGCTATGG--- 4400 Query 535 CATTTATAT 543 |||||||| Sbjct 4401 -ATTTATAT 4408 >seq34962 Length=1018 Score = 80.6 bits (88), Expect = 9e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126 GATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGA 185 |||||||| ||| ||| |||||| ||||| | ||||||||||||||||||| | ||| Sbjct 127 GATGAGCTATGGATAGCAGTGAAAAGCTAATCGAACTTGGAAATAGCTGGTTTACCGCGA 186 Query 186 AAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTG 234 |||||||| | |||| | || ||| | | || |||| ||||||| Sbjct 187 AAACTATTGAAGTAGAACGCTAAATATAATTAACGAAGGTACAGCACTG 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688543374848