Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq365 520 3e-145 seq14759 206 9e-51 seq413 140 1e-30 seq782 98.7 3e-18 seq4109 84.2 7e-14 seq19382 75.2 4e-11 >seq365 Length=63520 Score = 520 bits (576), Expect = 3e-145 Identities = 461/573 (80%), Gaps = 46/573 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| | ||||||||||||||||||| Sbjct 38749 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTCACCTTAGGACACCTGCGTTACC 38808 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| || |||| |||| || | || Sbjct 38809 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACACTGTCTTCGGAGTAGTTC 38868 Query 127 GGCCCGCGA---AG-----GACCTT-AACGCCAGAAAA-TGGTCGGTGAAG---ACCAG- 172 |||| | || || |||||| || |||| || | ||| || | | ||| Sbjct 38869 GGCCGGTGACCGAGTCACCGACCTTCAATGCCAAAACCGTAGTCTGTCTATTTCAACAGA 38928 Query 173 --TTC-CGCTTCATT---GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 | | | || | || || |||||||| |||| || | |||||||||||||| | || Sbjct 38929 CTTACTCACTACTTTACCGAATAAGTAAAGAAACAATGAAAGTAGTGGTATTTCATTGGC 38988 Query 227 GCCGAAA-CGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 | | | | | ||||||||||| |||||||||||| ||| |||||| ||||| |||| Sbjct 38989 GGCCATTGCTGACCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAGAGTCGAACTA 39048 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 39049 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTCTGCCAAGCCCGTTCCCTTGGCT 39108 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA------- 396 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 39109 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGATGATCCATTCATGCGCGT 39168 Query 397 ----------------TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 39169 CACNNNNNNNNNNNNNTGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 39228 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 39229 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGACATTC 39288 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| Sbjct 39289 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 39321 >seq14759 Length=4751 Score = 206 bits (228), Expect = 9e-51 Identities = 229/303 (76%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||| |||||| |||||| ||||||||||||||||||||| Sbjct 4454 CTTTTGTTCTACTCGAGATTTCCGTTCTCGATGAGTTGCCCTTAGGACACCTGCGTTATT 4513 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||| ||||| ||||| | || | || Sbjct 4514 CTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCATCTGACCATGTCTTTGACAAAGGTC 4573 Query 127 GGCCCGCGAAGGAC---CTTAACGCCAGAAAATG---GTCGGTGAAGACCAGTTCCGCTT 180 | | ||| || ||||| || |||| || | || | || ||| Sbjct 4574 GCCGGTACAAGTACCAGCTTAATGCTAGAATCTGCAATTGCTTGCAATCCTTTTC----- 4628 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG-AAACGGCTC 239 ||| | |||||||||||||||||||||||||||||||||| || | | ||| Sbjct 4629 CATCAAATAAGTAAAAAAACGATAAGGGTAGTGGTATTTCAAGATCGAGGTTGCCCTCTC 4688 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||| ||||||| | | ||| |||||||| | | |||||||||||||||||||| Sbjct 4689 CCACTTATGCTACACCCCCTATGTCTTTTCACAATGCCAAACTAGAGTCAAGCTCAACAG 4748 Query 300 GGT 302 ||| Sbjct 4749 GGT 4751 >seq413 Length=60650 Score = 140 bits (154), Expect = 1e-30 Identities = 109/129 (84%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||| | ||||||||||||||| |||||||||||| ||| | |||||||||||||||| Sbjct 8262 CATGCACATCACTAATTAGATGAGAAGGCATTTGGCTTCCTCAGGAGAGTCATAGTTACT 8321 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 || ||| |||||| ||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 8322 CCTGCCATTTACCTATGCTTGATTGAAATT-TTCACTTTGACATCCAGAGAGCTGGGCAG 8380 Query 515 AAATCACAT 523 ||| |||| Sbjct 8381 GAATTACAT 8389 >seq782 Length=48287 Score = 98.7 bits (108), Expect = 3e-18 Identities = 94/121 (78%), Gaps = 7/121 (6%) Strand=Plus/Minus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 ||| | ||||||| | ||||||||||||||| |||||||||||||||| | ||| Sbjct 31044 TCAATGATTAGATTATACAGCATTTGGCTACCTTTGGAGAGTCATAGTTACTTCTGCCTA 30985 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 | ||||| |||||||| ||||||||||||| ||||| |||||||| ||| ||| Sbjct 30984 T-------GCTTGATTGAATTTTTTCACTTTGACATACAGAGTGCTGGGCAGGAATTACA 30932 Query 523 T 523 | Sbjct 30931 T 30931 >seq4109 Length=19425 Score = 84.2 bits (92), Expect = 7e-14 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 |||||||||||||||| || |||||||||||||| || ||| | |||| ||| || | Sbjct 12676 TCACTAATTAGATGACAAGACATTTGGCTACCTTGAGGAAGTGACAGTT-GTCCTGCTAT 12618 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||| |||| || | || || ||| |||||| || || |||||| | ||||| | Sbjct 12617 TTACCCATGCTTAATTAATTTGTTTTACTCTGACATCCACAGTGCTGGGCTGGAATCAGA 12558 Query 523 T 523 | Sbjct 12557 T 12557 >seq19382 Length=3128 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 3128 TTCAGAGCACTGGGCAGAAATCACTTTGCGTCAACATCATTTTCTG 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634177394976