Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq11573 275 1e-71 seq12543 178 3e-42 >seq11573 Length=6636 Score = 275 bits (304), Expect = 1e-71 Identities = 287/370 (78%), Gaps = 9/370 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCT-CCCACACG 59 ||||||||||||||||||||||| ||||||||| || |||| | || ||| ||| |||| Sbjct 1646 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTATAGTACCTTCA-GCTACCCTCACG 1588 Query 60 TGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACG 119 || | ||||| || || ||||||||||||||| || ||| || || ||||||||| Sbjct 1587 AGGGTAGGTTTATCCCTATACAAAAGAAGTTTACAACCCATAGGGCCGTCGTCCTTCACG 1528 Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179 | ||||||| |||| ||||| |||||| |||||||||||||||||||||||||||| Sbjct 1527 CGGGATGGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTA 1468 Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239 ||||| ||| |||||||||||| ||| ||||||||| | |||||||| |||||| | Sbjct 1467 GGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAAGA 1408 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC---G 296 |||||| || |||| ||||||||| | || |||| ||||| ||| | |||||| Sbjct 1407 TCGTAGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCTTGCGCGTGCCCATCTCTA 1348 Query 297 TACACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAAT 356 | ||||| || | || ||| || | |||| ||| || ||| || ||||||||| Sbjct 1347 TCCACCG--GAGTTTTCAATACCGA-ATGATGCCATC-CAGTATATTATGGGGTATTAAT 1292 Query 357 CTTTCTTTCG 366 ||| |||||| Sbjct 1291 CTTCCTTTCG 1282 >seq12543 Length=5972 Score = 178 bits (196), Expect = 3e-42 Identities = 212/285 (74%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59 ||||||||||||| ||||||||| ||||||||| | ||||| || | || || Sbjct 863 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCCGGTACCGTCATCCCCCGACTGTA 804 Query 60 -TGGA----AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | || ||| ||| || || | ||||| ||||||| ||| || ||||| || Sbjct 803 TTAGAGCCAAGGATTTCTTTCCGGACAAAAGTGCTTTACAACCCGAAGG-CCTTCTTCAC 745 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| | | ||||| |||| || ||| |||||| |||| ||||| |||||||||||| Sbjct 744 ACACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTC 685 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | || Sbjct 684 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 625 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | || ||| |||| ||||||| || |||| ||||| Sbjct 624 ACTGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAAT 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068131604544