Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11937 448 1e-123 seq365 392 1e-106 seq9286 96.9 1e-17 seq61 89.7 2e-15 seq10030 75.2 3e-11 >seq11937 Length=6370 Score = 448 bits (496), Expect = 1e-123 Identities = 410/523 (78%), Gaps = 28/523 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTAC-AAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| | ||||| ||||| || | ||| ||||||||||||||||| Sbjct 3110 GTACTCATTCCAATTGCGAAGACTAAAAAGTCCC--GCATCGTTATTTATTGTCACTACC 3167 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||||||||||| ||| Sbjct 3168 TCCCTGTATCAGGATTGGGTAATTTGCGCGCCTNNNNNNNNNNNNNNNNNNNNNNNNCGT 3227 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 3228 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTATCACCACGGT 3287 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||| || ||||||||||||||||||||| ||| || |||||||| || Sbjct 3288 AGGCCTCTATCCTACCGTCAAAAGTTGATAGGGCAGAAATTCGAACGACCCATCGCCAGC 3347 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA-------GGAGCCCCGAAGG 292 |||||||||||||| | | ||||| |||||||||||| | ||||||| Sbjct 3348 ACAAGGCCATGCGATCTGCAAGGTTATCATGAATCACCAAAAAACGGGTTGCCCCGA--- 3404 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTCGGGGTTTTTA--GCAT 347 |||||| | |||||||||| | || ||||||| | ||| || ||| | ||| Sbjct 3405 ---TTGGTTCTGTATCTAATAACTGCATCCCTTCCATAAAGGTCAGGACTTTCAAGGCAC 3461 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT------ATCAAATAA 401 |||||||||||||||||||||||||||||| ||||||| | | || |||| Sbjct 3462 GTATTAGCTCTAGAATTACCACGGTTATCCGAGTAGTAATTAAATTAGGACGTCGAATAG 3521 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 | |||||||||||||||||||||||||||||||||||| | | ||||||| |||||||| Sbjct 3522 ATTATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-TTGTTTGCTTAAACTTAGAC 3580 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||||||||| ||||||||||| Sbjct 3581 ATGCATGGCTTAATCTNNNAGACAAGCATATAACTACTGGCAG 3623 >seq365 Length=63520 Score = 392 bits (434), Expect = 1e-106 Identities = 400/517 (77%), Gaps = 15/517 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || ||| | | |||| | | |||| || ||||| | |||||||||| Sbjct 46167 GTACCCATTCCGATGACAGGCCACAAA-GTGGACTGTCTCGTTATTTTTCGTCACTACCT 46225 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 46226 CCCCGTACCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 46285 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 46286 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTATAACCATGGTA 46345 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || |||||||||||||||||||| |||||| ||||||| || | ||||| | Sbjct 46346 GGCATATAACCTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATACGTCGCCAGTA 46405 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA---GGAGCCCCGAAGGGCGTT 297 | | | |||||| ||||||| || ||||||| | |||| || | Sbjct 46406 CGTGACTGTGCGATCACCATAGTTATTCAGAGTCACCAAAACAACGGGCCGAGACCCGAT 46465 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-----GAAG----TCGGGGTTTTTAGCATG 348 | |||| ||||||||||| | | | |||| |||| || | || ||||| Sbjct 46466 TGGTTTTGATCTAATAAATGCGCTCTTTCCCCCGTGAAGAGGTCCGAGCTTAAGTGCATG 46525 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAACGATA 407 ||||||||||||||||||||| |||||||| |||| | | || ||| ||||||| || Sbjct 46526 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAGAACAACTAAAATCTAATAAACCGTA 46585 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||| | || ||||||||||| | || || | | | || | | ||||||||||||| Sbjct 46586 GCTGTTATACCGAGCCATTCGCGGCTTTACCAT-TTTAAGGCCTGTGCTTAGACATGCAT 46644 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||||||||| Sbjct 46645 GGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 46681 >seq9286 Length=8802 Score = 96.9 bits (106), Expect = 1e-17 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAACGATAACT 410 ||||| |||||||||||| ||||||| |||| | | || ||| || |||| || || Sbjct 5967 TAGCTATAGAATTACCACAATTATCCAAGTAGAACAACTAAAATCTAACAAACTGTAGCT 5908 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 | | || |||||||||| | || || | | | || | | |||||||| |||| | Sbjct 5907 GTTATACTGAGCCATTCCTGGCTTTACCATTTTAAG-GCCTGTGCTTAGACAGGCATAGT 5849 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGC 502 ||||||||||||||| |||||| ||||||||| Sbjct 5848 TTAATCTTTGAGACAGGCATATAACTACTGGC 5817 >seq61 Length=100724 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 44 ATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCT 103 |||| | ||||||||||||| || ||||||||||||||||| | ||||||||||| || Sbjct 45396 ATTTTTCGTCACTACCTCCCAGTACCGGGATTGGGTAATTTGTCCACCTGCTGCCTTTCT 45455 Query 104 TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||| || | || ||||||||| | |||| Sbjct 45456 TGGATAAGGCACCCCTTTCTCAGGACCTCTCT 45487 >seq10030 Length=8004 Score = 75.2 bits (82), Expect = 3e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 114 AGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC 173 |||| ||||||||| |||||||| | ||||| ||| |||| || | | | ||| || Sbjct 1667 AGCCCTTTCTCAGGTTCCCTCTCTAAAGTCGAATCCTTATTCTCCATCATCAATTGTAAC 1608 Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||| |||||| || ||| | ||||||||||| |||||||||||| Sbjct 1607 CATTGTAGGCATATAACCTGAAAGTGAAAGTTGATAAGGCAGAAATTTG 1559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509455441152